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Difference between revisions of "O2k-Publications: Topics"

From Bioblast
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== Coupling control states ==
== Coupling control states ==
* [[O2k-Publications: OXPHOS |OXPHOS]]
::::{| class="wikitable sortable" style="text-align:center"
* [[O2k-Publications: ROUTINE |ROUTINE]]
! #
* [[O2k-Publications: ETS |ETS]]
! O2k-Publications
* [[O2k-Publications: LEAK |LEAK]]  
! MitoPedia: [[Pathway control state]]s
! Comment
! O2k
! Total
|-
| 1
| [[O2k-Publications: OXPHOS |''P'']]
| style="text-align:left"|[[Image:P.jpg|link=OXPHOS capacity|OXPHOS]] [[OXPHOS capacity]]
| style="text-align:left"|Oxidative phosphorylation capacity, saturating [[ADP |[ADP]]]
| {{#ask:[[Category:Publications]][[Instrument and  method::Oxygraph-2k]][[Coupling states::OXPHOS]] |format=count}}
| {{#ask:[[Category:Publications]][[Coupling states::OXPHOS]] |format=count}}
|-
| 2
| [[O2k-Publications: ROUTINE |''R'']]
| style="text-align:left"|[[Image:R.jpg|link=ROUTINE respiration|ROUTINE]] [[ROUTINE respiration]]
| style="text-align:left"|Physiological state, intact cells
| {{#ask:[[Category:Publications]][[Instrument and  method::Oxygraph-2k]][[Coupling states::ROUTINE]] |format=count}}
| {{#ask:[[Category:Publications]][[Coupling states::ROUTINE]] |format=count}}
|-
| 3
| [[O2k-Publications: ETS |''E'']]
| style="text-align:left"|[[Image:E.jpg|link=ETS capacity|ETS]] [[Electron transfer system capacity]]
| style="text-align:left"|Maximal noncoupled respiration
| {{#ask:[[Category:Publications]][[Instrument and  method::Oxygraph-2k]][[Coupling states::ETS]] |format=count}}
| {{#ask:[[Category:Publications]][[Coupling states::ETS]] |format=count}}
|-
| 4
| [[O2k-Publications: LEAK |''L'']]
| style="text-align:left"|[[Image:L.jpg|link=LEAK respiration|LEAK]] [[LEAK respiration]]
| style="text-align:left"|Resting state, non-phosphorylating respiration
| {{#ask:[[Category:Publications]][[Instrument and  method::Oxygraph-2k]][[Coupling states::LEAK]] |format=count}}
| {{#ask:[[Category:Publications]][[Coupling states::LEAK]] |format=count}}
|-
|}




Line 240: Line 273:
| 9
| 9
| [[O2k-Publications: ROX |ROX]]
| [[O2k-Publications: ROX |ROX]]
| style="text-align:left"|[[Residual oxygen consumption]]
| style="text-align:left"|[[Image:ROX.jpg|link=Residual oxygen consumption|ROX]] [[Residual oxygen consumption]]
| style="text-align:left"|includes non-mitochondrial respiration
| style="text-align:left"|includes non-mitochondrial respiration
| {{#ask:[[Category:Publications]][[Instrument and  method::Oxygraph-2k]][[Pathways::ROX]] |format=count}}  
| {{#ask:[[Category:Publications]][[Instrument and  method::Oxygraph-2k]][[Pathways::ROX]] |format=count}}  

Revision as of 08:36, 10 November 2016

                



O2k-Publications: Topics

Mitochondria and cell research
O2k-Publications: chronological
Publications in the MiPMap


See also » O2k-Publications - chronological: 4685


Mitochondrial physiology: MiP areas


Pathological states

Alphabetical order


Stress conditions

Alphabetical order


Organisms

Mammals
Model organisms
Non-mammals
  • BirdsChicken)
  • Reptiles - turtles, lizards, snakes, crocodiles, alligators
  • Amphibians - frogs, toads, salamanders
  • Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish
  • Hexapods - insects, springtails; » Drosophila
  • Crustaceans - crabs, shrimp, barnacles, etc.; » Artemia
  • Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
  • Molluscs - gastropods, cephalopods, bivalves
  • Nematodes » Caenorhabditis elegans
  • Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
  • Fungi - yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae
  • Plants
  • Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
  • Eubacteria - true bacteria, cyanobacteria, spirochetes
  • Archaea - archaebacteria


Tissues and cells

Tissues - alphabetical order

•• Fat •• Genital •• Heart •• Kidney •• Liver •• Lung;Gill •• Nervous system •• Skeletal muscle

Cell types - alphabetical order

•• Blood cells •• Endothelial;epithelial;mesothelial cell •• Fibroblast •• Islet cell;pancreas;thymus •• Lymphocyte •• Platelet •• Stem cells

Cell lines - alphabetical order

•• CHO •• HEK •• HeLa •• Neuroblastoma •• HUVEC •• Macrophage-derived cell lines


Preparations


Enzymes

Alphabetical order

•• Adenine nucleotide translocase •• Complex I •• Complex II;succinate dehydrogenase •• Complex III •• Complex IV;cytochrome c oxidase •• Complex V;ATP synthase •• Inner mt-membrane transporter •• Marker enzyme •• Supercomplex •• TCA cycle and matrix dehydrogenases •• Uncoupling protein


Regulation

Alphabetical order

•• ADP •• ATP production •• Aerobic glycolysis •• Amino acid •• Calcium •• Coupling efficiency;uncoupling •• Cyt c •• Fatty acid •• Flux control •• Inhibitor •• Ion;substrate transport •• mt-Membrane potential •• Oxygen kinetics •• Q-junction effect •• Redox state •• Substrate •• Temperature •• Threshold;excess capacity •• Uncoupler


Coupling control states

# O2k-Publications MitoPedia: Pathway control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2847 3074
2 R ROUTINE ROUTINE respiration Physiological state, intact cells 888 974
3 E ETS Electron transfer system capacity Maximal noncoupled respiration 0 0
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2591 2747


Pathway control states

# O2k-Publications MitoPedia: Pathway control states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 605 748
2 N N-pathway control state NADH-linked, level 4 2456 2604
3 S S-pathway control state Succinate-linked, level 3 1676 1784
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 154 180
5 DQ Duorquinol-linked, level 2 26 31
6 CIV Complex IV single step Ascorbate & TMPD, level 1 699 727
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1566 1622
8 Other combinations 130 146
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1513 1565


MiPMap combinations - examples

Examples for specific combinations
Browse data


O2k-Manuals and protocols and specific instrumental applications