Difference between revisions of "O2k-Publications: Topics"

Revision as of 09:45, 10 November 2016

O2k-Publications: Topics

Mitochondria and cell research

Mitochondrial physiology: MiP areas

Pathological states

Alphabetical order

Stress conditions

Alphabetical order

Organisms

Mammals

Human
Pig
Horse
Bovines
Cat
Dog
Rabbit
Mouse
Rat
Guinea pig
Other mammals: including only mammals that are not listed as mammalian species above'.

Model organisms

Non-mammals

Birds (» Chicken)
Reptiles - turtles, lizards, snakes, crocodiles, alligators
Amphibians - frogs, toads, salamanders
Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish
Hexapods - insects, springtails; » Drosophila
Crustaceans - crabs, shrimp, barnacles, etc.; » Artemia
Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
Molluscs - gastropods, cephalopods, bivalves
Nematodes » Caenorhabditis elegans
Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
Fungi - yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae
Plants
Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
Eubacteria - true bacteria, cyanobacteria, spirochetes
Archaea - archaebacteria

Tissues and cells

Tissues - alphabetical order

•• Fat •• Genital •• Heart •• Kidney •• Liver •• Lung;Gill •• Nervous system •• Skeletal muscle

Cell types - alphabetical order

•• Blood cells •• Endothelial;epithelial;mesothelial cell •• Fibroblast •• Islet cell;pancreas;thymus •• Lymphocyte •• Platelet •• Stem cells

Cell lines - alphabetical order

•• CHO •• HEK •• HeLa •• Neuroblastoma •• HUVEC •• Macrophage-derived cell lines

Other cells and cell lines

Preparations

Intact organism •• Intact organ •• Intact cells •• Permeabilized cells •• Permeabilized tissue •• Homogenate •• Isolated mitochondria •• SMP •• Chloroplasts •• Enzyme •• Oxidase and biochemical oxidation

Enzymes

Alphabetical order

•• Adenine nucleotide translocase •• Complex I •• Complex II;succinate dehydrogenase •• Complex III •• Complex IV;cytochrome c oxidase •• Complex V;ATP synthase •• Inner mt-membrane transporter •• Marker enzyme •• Supercomplex •• TCA cycle and matrix dehydrogenases •• Uncoupling protein

Regulation

Alphabetical order

•• ADP •• ATP production •• Aerobic glycolysis •• Amino acid •• Calcium •• Coupling efficiency;uncoupling •• Cyt c •• Fatty acid •• Flux control •• Inhibitor •• Ion;substrate transport •• mt-Membrane potential •• Oxygen kinetics •• Q-junction effect •• Redox state •• Substrate •• Temperature •• Threshold;excess capacity •• Uncoupler

Coupling control states

#	O2k-Publications	MitoPedia: Pathway control states	Comment	O2k	Total
1	P	OXPHOS capacity	Oxidative phosphorylation capacity, saturating [ADP]	2856	3084
2	R	ROUTINE respiration	Physiological state, intact cells	892	979
3	E	Electron transfer system capacity	Maximal noncoupled respiration	0	0
4	L	LEAK respiration	Resting state, non-phosphorylating respiration	2601	2759

Pathway control states

#	O2k-Publications	MitoPedia: Pathway control states	Comment	O2k	Total
1	F	F-pathway control state	Fatty acid oxidation, level 5	607	751
2	N	N-pathway control state	NADH-linked, level 4	2465	2613
3	S	S-pathway control state	Succinate-linked, level 3	1678	1786
4	Gp	Gp-pathway control state	Glycerophosphate-linked, level 3	156	182
5	DQ		Duorquinol-linked, level 2	26	31
6	CIV	Complex IV single step	Ascorbate & TMPD, level 1	700	728
7	NS	NS-pathway control state	Convergent CI- and CII-linked electron flow to the Q-junction	1572	1628
8	Other			131	147
9	ROX	Residual oxygen consumption	includes non-mitochondrial respiration	1516	1568

MiPMap combinations - examples

Examples for specific combinations

O2k-Publications: Human skeletal muscle •• O2k-Publications: Human heart •• O2k-Publications: Skeletal muscle - human vs mouse

Browse data

Browse O2k-Publications

O2k-Manuals and protocols and specific instrumental applications

O2k-Manual •• Instruments;methods •• TIP2k •• O2k-Fluorometry•• O2k-Fluorometry - Fluorophores•• TPP + ISE-Module •• O2k-pH ISE-Module •• Theoretical background •• O2k-Protocols •• PBI Shredder

Twin-Flow respirometry •• Separate DatLab applications

@@ Line 176: / Line 176: @@
 |-
 | 1
-| [[O2k-Publications: OXPHOS |''P'']]
+| [[O2k-Publications: OXPHOS |<big>'''''P'''''</big>]]
 | style="text-align:left"|[[Image:P.jpg|link=OXPHOS capacity|OXPHOS]] [[OXPHOS capacity]]
 | style="text-align:left"|Oxidative phosphorylation capacity, saturating [[ADP |[ADP]]]
@@ Line 183: / Line 183: @@
 |-
 | 2
-| [[O2k-Publications: ROUTINE |''R'']]
+| [[O2k-Publications: ROUTINE |<big>'''''R'''''</big>]]
 | style="text-align:left"|[[Image:R.jpg|link=ROUTINE respiration|ROUTINE]] [[ROUTINE respiration]]
 | style="text-align:left"|Physiological state, intact cells
@@ Line 190: / Line 190: @@
 |-
 | 3
-| [[O2k-Publications: ETS |''E'']]
+| [[O2k-Publications: ETS |<big>'''''E'''''</big>]]
 | style="text-align:left"|[[Image:E.jpg|link=ETS capacity|ETS]] [[Electron transfer system capacity]]
 | style="text-align:left"|Maximal noncoupled respiration
@@ Line 197: / Line 197: @@
 |-
 | 4
-| [[O2k-Publications: LEAK |''L'']]
+| [[O2k-Publications: LEAK |<big>'''''L'''''</big>]]
 | style="text-align:left"|[[Image:L.jpg|link=LEAK respiration|LEAK]] [[LEAK respiration]]
 | style="text-align:left"|Resting state, non-phosphorylating respiration
@@ Line 216: / Line 216: @@
 |-
 | 1
-| [[O2k-Publications: F |F]]
+| [[O2k-Publications: F |<big>'''F'''</big>]]
 | style="text-align:left"|[[F-pathway control state]]
 | style="text-align:left"|Fatty acid oxidation, level 5
@@ Line 223: / Line 223: @@
 |-
 | 2
-| [[O2k-Publications: N |N]]
+| [[O2k-Publications: N |<big>'''N'''</big>]]
 | style="text-align:left"|[[N-pathway control state]]
 | style="text-align:left"|NADH-linked, level 4
@@ Line 230: / Line 230: @@
 |-
 | 3
-| [[O2k-Publications: S |S]]
+| [[O2k-Publications: S |<big>'''S'''</big>]]
 | style="text-align:left"|[[S-pathway control state]]
 | style="text-align:left"|Succinate-linked, level 3
@@ Line 237: / Line 237: @@
 |-
 | 4
-| [[O2k-Publications: Gp |Gp]]
+| [[O2k-Publications: Gp |<big>'''Gp'''</big>]]
 | style="text-align:left"|[[Gp-pathway control state]]
 | style="text-align:left"|Glycerophosphate-linked, level 3
@@ Line 244: / Line 244: @@
 |-
 | 5
-| [[O2k-Publications: DQ |DQ]]
+| [[O2k-Publications: DQ |<big>'''DQ'''</big>]]
 | style="text-align:left"|
 | style="text-align:left"|Duorquinol-linked, level 2
@@ Line 251: / Line 251: @@
 |-
 | 6
-| [[O2k-Publications: CIV |CIV]]
+| [[O2k-Publications: CIV |<big>'''CIV'''</big>]]
 | style="text-align:left"|[[Complex IV single step]]
 | style="text-align:left"|Ascorbate & TMPD, level 1
@@ Line 258: / Line 258: @@
 |-
 | 7
-| [[O2k-Publications: NS |NS]]
+| [[O2k-Publications: NS |<big>'''NS'''</big>]]
 | style="text-align:left"|[[NS-pathway control state]]
 | style="text-align:left"|Convergent CI- and CII-linked electron flow to the [[Q-junction]]
@@ Line 265: / Line 265: @@
 |-
 | 8
-| [[O2k-Publications: Other combinations |Other combinations]]
+| [[O2k-Publications: Other combinations |<big>Other</big>]]
 | style="text-align:left"|
 | style="text-align:left"|
@@ Line 272: / Line 272: @@
 |-
 | 9
-| [[O2k-Publications: ROX |ROX]]
+| [[O2k-Publications: ROX |<big>'''ROX'''</big>]]
 | style="text-align:left"|[[Image:ROX.jpg|link=Residual oxygen consumption|ROX]] [[Residual oxygen consumption]]
 | style="text-align:left"|includes non-mitochondrial respiration