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Difference between revisions of "O2k-Publications: Topics"

From Bioblast
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== Stress conditions ==
== Stress conditions ==
:: ''Alphabetical order''
:: ''Alphabetical order''
* [[O2k-Publications: Cell death|Cell death]]  
::::{| class="wikitable sortable" style="text-align:center"
* [[O2k-Publications: Cryopreservation|Cryopreservation]]  
! #
* [[O2k-Publications: Hypoxia|Hypoxia]]  
! O2k-Publications
* [[O2k-Publications: Ischemia-Reperfusion Injury and Preservation|Ischemia-reperfusion injury and preservation]]  
! MitoPedia:
* [[O2k-Publications: Mitochondrial Disease; Degenerative Disease and Defect|Mitochondrial disease;degenerative disease and defect]]  
! Comment
* [[O2k-Publications: RONS;_Oxidative_stress|Oxidative stress;RONS]]  
! O2k
* [[O2k-Publications: Permeability transition|Permeability transition]]  
! Total
* [[O2k-Publications: Temperature: hypothermia; hyperthermia|Temperature: hypothermia; hyperthermia]]
|-
| 1
| [[O2k-Publications: Cell death|Cell death]]  
| style="text-align:left"|
| style="text-align:left"|White, brown, beige fat tissue
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Stress::Cell death]] |format=count}}
| {{#ask:[[Category:Publications]] [[Stress::Cell death]] |format=count}}
|-
| 2
| [[O2k-Publications: Cryopreservation|Cryopreservation]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Stress::Cryopreservation]] |format=count}}
| {{#ask:[[Category:Publications]] [[Stress::Cryopreservation]] |format=count}}
|-
| 3
| [[O2k-Publications: Hypoxia|Hypoxia]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Stress::Hypoxia]] |format=count}}
| {{#ask:[[Category:Publications]] [[Stress::Hypoxia]] |format=count}}
|-
| 4
| [[O2k-Publications: Ischemia-Reperfusion Injury and Preservation|Ischemia-reperfusion injury and preservation]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Stress::Ischemia-reperfusion;preservation]] |format=count}}
| {{#ask:[[Category:Publications]] [[Stress::Ischemia-reperfusion;preservation]] |format=count}}
|-
| 5
| [[O2k-Publications: Mitochondrial Disease; Degenerative Disease and Defect|Mitochondrial disease;degenerative disease and defect]]  
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Stress::Mitochondrial Disease; Degenerative Disease and Defect]] |format=count}}
| {{#ask:[[Category:Publications]] [[Stress::Mitochondrial Disease; Degenerative Disease and Defect]] |format=count}}
|-
| 6
| [[O2k-Publications: RONS;_Oxidative_stress|Oxidative stress;RONS]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Stress::Oxidative stress;RONS]] |format=count}}
| {{#ask:[[Category:Publications]] [[Stress::Oxidative stress;RONS]] |format=count}}
|-
| 7
| [[O2k-Publications: Permeability transition|Permeability transition]]  
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Stress::Permeability transition]] |format=count}}
| {{#ask:[[Category:Publications]] [[Stress::Permeability transition]] |format=count}}
|-
| 8
| [[O2k-Publications: Temperature: hypothermia; hyperthermia|Temperature: hypothermia; hyperthermia]]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Stress::Temperature]] |format=count}}
| {{#ask:[[Category:Publications]] [[Stress::Temperature]] |format=count}}
|- 
|}
 


   
   

Revision as of 12:11, 11 November 2016

                



O2k-Publications: Topics

Mitochondria and cell research
O2k-Publications: chronological
Publications in the MiPMap


See also » O2k-Publications - chronological: 4685


Mitochondrial physiology: MiP areas


Pathological states

Alphabetical order


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 93 156
2 Cryopreservation 41 67
3 Hypoxia 115 226
4 Ischemia-reperfusion injury and preservation 0 0
5 Mitochondrial disease;degenerative disease and defect 0 0
6 Oxidative stress;RONS 580 837
7 Permeability transition 71 96
8 Temperature: hypothermia; hyperthermia] 91 112


Organisms

Mammals
Model organisms
Non-mammals
  • BirdsChicken)
  • Reptiles - turtles, lizards, snakes, crocodiles, alligators
  • Amphibians - frogs, toads, salamanders
  • Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish
  • Hexapods - insects, springtails; » Drosophila
  • Crustaceans - crabs, shrimp, barnacles, etc.; » Artemia
  • Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
  • Molluscs - gastropods, cephalopods, bivalves
  • Nematodes » Caenorhabditis elegans
  • Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
  • Fungi - yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae
  • Plants
  • Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
  • Eubacteria - true bacteria, cyanobacteria, spirochetes
  • Archaea - archaebacteria


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 185 259
2 Genital 92 123
3 Heart 724 936
4 Kidney 150 183
5 Liver 644 839
6 Lung;Gill 59 82
7 Nervous system 606 732
8 Skeletal muscle 1098 1362


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 253 319
2 Endothelial;epithelial;mesothelial cell 258 293
3 Fibroblast 203 267
4 Islet cell;pancreas;thymus 54 66
5 Lymphocyte 58 76
6 Platelet 121 151
7 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 14 16
2 HEK 94 115
3 HeLa 38 55
4 Neuroblastoma 42 49
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 37
7 Other cells and cell lines 292 338


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Intact organism 53 248
2 Intact organ 23 38
3 Intact cells 1157 1305
4 Permeabilized cells 711 749
5 Permeabilized tissue 1107 1201
6 Homogenate 374 418
7 Isolated mitochondria 1257 1563
8 SMP 10 28
9 Chloroplasts 2 10
10 Enzyme 39 102
11 Oxidase and biochemical oxidation 39 49


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase 21 27
2 Complex I 460 606
3 Complex II;succinate dehydrogenase 410 637
4 Complex III 300 362
5 Complex IV;cytochrome c oxidase 405 496
6 Complex V;ATP synthase 219 266
7 Inner mt-membrane transporter 31 44
8 Marker enzyme 58 84
9 Supercomplex 48 77
10 TCA cycle and matrix dehydrogenases 81 108
11 Uncoupling protein 60 66


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP 152 207
2 ATP production 78 123
3 Aerobic glycolysis 49 94
4 Amino acid 9 20
5 Calcium 106 179
6 Coupling efficiency;uncoupling 82 161
7 Cyt c 42 56
8 Fatty acid 127 159
9 Flux control 54 86
10 Inhibitor 131 169
11 Ion;substrate transport 64 115
12 mt-Membrane potential 116 179
13 Oxygen kinetics 106 147
14 Q-junction effect 14 57
15 Redox state 58 98
16 Substrate 181 236
17 Temperature 73 100
18 Threshold;excess capacity 27 30
19 Uncoupler 55 70


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2847 3074
2 R ROUTINE ROUTINE respiration Physiological state, intact cells 888 974
3 E ETS Electron transfer system capacity Maximal noncoupled respiration 0 0
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2591 2747


Pathway control states

# O2k-Publications MitoPedia: Pathway control states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 605 748
2 N N-pathway control state NADH-linked, level 4 2456 2604
3 S S-pathway control state Succinate-linked, level 3 1676 1784
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 154 180
5 DQ Duorquinol-linked, level 2 26 31
6 CIV Complex IV single step Ascorbate & TMPD, level 1 699 727
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1566 1622
8 Other 130 146
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1513 1565


MiPMap combinations - examples

Examples for specific combinations
Browse data


O2k-Manuals and protocols and specific instrumental applications