Affinity of reaction

From Bioblast
(Redirected from Affinity)
Jump to: navigation, search
Bioblasts - Richard Altmann and MiPArt by Odra Noel
MitoPedia         Terms and abbreviations         Concepts and methods         MitoPedia: SUIT         MiP and biochemistry         Preprints and history



MitoPedia

Affinity of reaction

Description

The concept of affinity and hence chemical force is deeply rooted in the notion of attraction (and repulsion) of alchemy, which was the foundation of chemistry originally, but diverted away from laboratory experiments towards occult secret societies [1].** Newton's extensive experimental alchemical work and his substantial written track record on alchemy (which he did not publish) is seen today as a key inspiration for his development of the concept of the gravitational force [2-4]. This marks a transition of the meaning of affinity, from the descriptive 'adjacent' (proximity) to the causative 'attractive' (force) [5]. Correspondingly, Lavoisier (1790) equates affinity and force [6]: “... the degree of force or affinity with which the acid adheres to the base” [5]. By discussing the influence of electricity and gravity on chemical affinity, Liebig (1844) considers affinity as a force [7]. This leads to Guldberg and Waage's mass action ratio ('Studies concerning affinity', 1864; see [5]), the free energy and chemical affinity of Helmholtz (1882 [8]), and chemical thermodynamics of irreversible processes [9], where flux-force relations are center stage [10].

According to the IUPAC definition, the affinity of reaction, A [J·mol-1], equals the negative molar Gibbs energy of reaction [11], which is the negative Gibbs force of reaction (derivative of Gibbs energy per advancement of reaction [12]):

-A = ΔrF = ∂G/∂rξ

The historical account of affinity is summarized by concluding, that today affinity of reaction should be considered as an isomorphic motive force and be generalized as such. This will help to (1) avoid confusing reversals of sign conventions (repulsion = negative attraction; pull = negative push), (2) unify symbols across classical and nonequilibrium thermodynamics [12,13], and thus (3) facilitate interdisciplinary communication by freeing ourselves from the alchemical, arcane scientific nomenclature.

Abbreviation: A [J·mol-1]

Reference: Force

Communicated by Gnaiger E 2018-12-27 (last update 2019-01-04)
** Fortunately the Open access movement leads into a direction opposite to secret scientific societies, progressing beyond the ivory tower. Many biomedical senior scientists, however, are loosing contact to the laboratory experiment. This may contribute to the fact, that the arcane language used in areas from molecular biology to physical chemistry remains reminiscent of the notoriously ununderstandable writings of alchemy.
Dobbs 1975 Cambridge Univ Press.png

Attraction and repulsion

  • Isaak Newton: And as in Algebra, where affirmative Quantities vanish and cease, there negative ones begin; so in Mechanicks, where Attraction ceases, there a repulsive Virtue ought to succeed. [2]
Transformation and convergence of opposites
  • Isaak Newton: That which is Above is like that which is Below and that which is Below is like that which is Above, to accomplish the miracles of only one thing. (transcription from Hermes Trismegistus [4])
Volatile 1.jpg
  • .. identifying the great mysterious symbols of alchemy as psychic images. [2] - the Oroboros symbol
  • Given the unlimited validity of Clausius' law, it would then be the value of the free energy, not that of the total energy resulting from heat production, which determines in which sense the chemical affinity can be active. (Helmholtz H. v. Die Thermodynamik chemischer Vorgänge, SB, pg. 23, pg. 22-29, in Wissenschaftliche Abhandlungen von Hermann von Helmholtz. 3 vols. Leipzig: J.A. Barth, 1882-95.) [8]
Eleazar 1760

References

  1. Jung CG (1944) Psychologie und Alchemie. Walter-Verlag Olten, 2. Auflage 1976:620 pp. - »Bioblast link«
  2. Dobbs BJT (1975) The foundations of Newton's alchemy or "The hunting of the Greene Lyon". Reissued as a paperback 1983. Cambridge Univ Press Cambridge:300 pp. - »Bioblast link«
  3. White M (1997) Isaak Newton. The last sorcerer. Fourth Estate, London 402 pp. - »Bioblast link«
  4. Schettino V (2017) Isaac Newton and alchemy. Substantia 1:69-76. - »Bioblast link«
  5. Raffa RB, Tallarida RJ (2010) ‘Affinity’: historical development in chemistry and pharmacology. Bull Hist Chem 35:7-16. - »Bioblast link«
  6. Lavoisier AL (1790) Elements of chemistry (translation by Kerr R, Dover Publications, New York, 1965:1–511.
  7. Liebig J (1844) Influence of heat, light, electricity, and gravity on chemical affinity. Lancet 8:209-11. - »Bioblast link«
  8. Helmoltz Hv (1882) Die Thermodynamik Chemischer Vorgänge. Mathematische und naturwissenschaftliche Mittheilungen. - Source
  9. De Donder T, Van Rysselberghe P (1936) Thermodynamic theory of affinity: a book of principles. Oxford, England: Oxford University Press:144 pp.
  10. Prigogine I (1967) Introduction to thermodynamics of irreversible processes. Interscience New York, 3rd ed:147 pp. - »Bioblast link«
  11. Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry. IUPAC Green Book 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. - »Bioblast link«
  12. Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. - »Bioblast link«
  13. Gnaiger E (1993) Efficiency and power strategies under hypoxia. Is low efficiency at high glycolytic ATP production a paradox? In: Surviving hypoxia: Mechanisms of control and adaptation. Hochachka PW, Lutz PL, Sick T, Rosenthal M, Van den Thillart G (eds) CRC Press, Boca Raton, Ann Arbor, London, Tokyo:77-109. - »Bioblast link«


Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling



MitoPedia concepts: Ergodynamics