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NextGen-O2k Technical developments

From Bioblast

Bioblast 2022



NextGen-O2k Technical developments

NextGen-O2k

The revolutionary all-in-one instrument to conquer mitochondrial disease.


WP1: Technical developments



Abstract

  • Development of the Q-Module, NADH-Module, and PB-Module and integration in the NextGen-O2k
  • Testing of the NextGen-O2k in collaboration with the Early testers
  • Testing and development of the software for the NextGen-O2k Modules
  • Integration of the new protocols in the DatLab software


NextGen-O2k: Horizon 2020 Framework Programme

  • EIC-SMEInst-2018-2020 โ€” SME instrument phase 2, Grant Agreement No. 859770, Oroboros Instruments
  • Budget: โ‚ฌ 2.35 Million
  • Duration: 24 months, extended additional 5 months
  • Application: 2019-01-09; Pitch in Brussels: 2019-02-15; Granted: 2019-03-05; Start: 2019-06-01 End: 2021-10-31
With the O2k core technology, developed exclusively by Oroboros for high-resolution measurement of oxygen flux, the NextGen-O2k was developed.


Oroboros products timeline.jpg
O2k
High-resolution respirometry (HRR) and unique combinations of the O2k with






Aims

Respiration and photosynthesis
Form the O2k to the NextGen-O2k
Between 1992 and 1994, Oroboros Instruments released its core technology for high-resolution respirometry (HRR), the Oxygraph-2k or O2k, for real-time monitoring of oxygen consumption of mitochondria, tissues, and living cells. Dissolved oxygen is measured using high-resolution polarographic oxygen sensors. Its main advantages are the unique signal stability and resolution of oxygen. HRR is the core technology present in every single of the devices and it will remain the basis of the NextGen-O2k.
In 2012, the updated version of the O2k was launched, the O2k-FluoRespirometer. The integrated Smart Fluo-Sensors combine fluorescence excitation and detection of defined wavelengths that in combination with fluorophores allow for the measurement of additional mitochondrial parameters, such as membrane potential, H2O2 production, calcium concentration, and ATP production.
The unique software DatLab has been developed for data acquisition and analysis. DatLab allows the researcher to perform calibrations (including automatic barometric and temperature adjustments), background correction, experimental SUIT (substrate-uncoupler-inhibitor-titration) protocols and data analysis.



Objectives

NextGen-O2k modules.jpg
The overall goal of this Phase 2 project is to complete the technical and scientific development of the new NextGen-O2k and prepare it for market launch.
WP1
ยป Technical developments
WP2
ยป Scientific developments
WP3
ยป Documentation
WP4
ยป Exploitation
WP5
ยป Dissemination
WP6
ยป Project management


Partners

Our partners WGT-Elektronik and HTech have been essential in the development of the NextGen-O2k.
WGT Logo 2012.jpg
Shtech.png


Early testers

The influence of KOLs and Early testers/adopters will be used to build awareness of NextGen-O2k among researchers, academic and industrial partners. We have confirmed relevant mitochondrial and algal biotechnology researchers who want to collaborate as early testers:


Biomedical research Algal research
Prof. Massimo Zeviani a,b, Dr. Carlo Viscomi c, Prof. Mervyn Singer a

a Medical Research Council - Mitochondrial Biology Unit, University of Cambridge, UK
b Department of Neurosciences, University of Padova, IT
c Department of Biomedical Sciences, University of Padova, IT

Dr. Tomas Morosinotto

Department of Biology, University of Padova, IT

Prof. Pablo Garcia-Roves

Department of Physiological Sciences, Faculty of Medicine and Health Sciences, University of Barcelona and Bellvitge Biomedical Research Institute (IDIBELL), ES

Prof. Yagut Allahverdiyeva-Rinne

Faculty of Technology, University of Turku, FI

Dr. Anthony Molina

Division of Geriatrics and Gerontology, Department of Medicine, University of San Diego, US

Prof. Claire Remacle

Genetics and Physiology of Microalgae, InBios/Phytosystems Research Unit, University of Liege, BE

Dr. Marten Szibor

Clinic for Heart and Thorax Surgery, Jena University Hospital, DE

Prof. Anthony Moore

Biochemistry and Medicine, School of Life Sciences, University of Sussex, UK

Dr. Christos Chinopoulos

Department of Medical Biochemistry, Semmelweis University, HU

NextGen-O2k events

 WhenWhere
MiPNet28.12 IOC167 Schroecken AT2024-09-30
O2k-Workshops.png
Schroecken AT, 2024 Sep 30 - Oct 05. Oroboros O2k-Workshop on high-resolution respirometry (HRR), IOC167.
IOC166 Ljubljana SI2024-09-22
O2k-Workshops.png
Ljubljana SI, 2024 Sep 22 - Sep 26. Satellite symposium and workshop "Skeletal Muscle Research โ€“ from Cell to Human", IOC166.
MiPNet28.13 IOC164 Innsbruck AT2024-09-02
O2k-Workshops.png
Innsbruck AT, 2024 Sep 02-04. EBEC2024 Satellite Oroboros O2k-Workshop: Mito&Chlora High-Resolution Respirometry and PhotoBiology, IOC164.
MiPNet28.11 IOC163 Schroecken AT2024-06-17
O2k-Workshops.png
Schroecken AT, 2024 Jun 17-22. Oroboros O2k-Workshop on high-resolution respirometry (HRR), IOC163.
MiPNet28.02 IOC162 Schroecken AT2023-10-02
O2k-Workshops.png
Schroecken AT, 2023 Oct 02-07. Oroboros O2k-Workshop on high-resolution respirometry (HRR), IOC162.
MiPNet28.01 IOC160 Schroecken AT2023-06-19
O2k-Workshops.png
Schroecken AT, 2023 Jun 19-24. Oroboros O2k-Workshop on high-resolution respirometry (HRR), IOC160.
MiPNet28.05 IOC158 Innsbruck AT2023-02-27
OROBOROS-solo.png
Innsbruck AT, 2023 Feb 27 - Mar 01. O2k-Coaching Days - Basic, IOC158.
Virtual OroDM022023
NextGenO2k logo.jpg
Virtual Oroboros Distributor Meeting, OroDM02
MiPNet27.04 IOC155 Schroecken AT2022-10-03
O2k-Workshops.png
Schroecken AT, 2022 Oct 03-08. Oroboros O2k-Workshop on high-resolution respirometry (HRR), IOC155.
MiPNet27.05 Schroecken BEC tutorial-Living Communications pmP2022-09-30
BEC-logo.png
Schroecken AT, 2022 Sep 30-Oct 03. BEC tutorial-Living Communications: pmF to pmP โ€” pre IOC155.
MiPNet27.03 IOC154 Innsbruck AT2022-08-01
OROBOROS-solo.png
Innsbruck AT, 2022 Aug 01-05. O2k-Coaching Days - O2k-FluoRespirometer and NextGen-O2k, IOC154.
MiPNet27.02 IOC153 Innsbruck AT2022-07-01
NextGenO2k logo.jpg
Innsbruck AT, 2022 Jul 01-02. NextGen-O2k All-in-one Demo Workshop IOC153.
MiPNet 26.16 NextGen-O2k Summit 2021 Virtual2021-10-20
NextGenO2k logo.jpg
Virtual, 2021 Oct 20. NextGen-O2k Summit, NextGen-O2k SME2. MiPNet 26.16.
The 4th Academic Symposium of Metabolic Biology Branch 2021 Guangxi CN2021-07-29Guangxi Province , CN, 2021 Jul 29 - Aug 02. The 4th Academic Symposium of Metabolic Biology Branch of Chinese Biophysical Society.
19th Beijing Conference and Exhibition on Instrumental Analysis 2021 Beijing CN2021-07-27Beijing, CN, 2021 Sep 27-29. 19th Beijing Conference and Exhibition on Instrumental Analysis.
19th Chinese Biophysics congress 2021 Anhui CN2021-07-23Anhui Province , CN, 2021 Jul 23-26. 19th Chinese Biophysics congress.
MiPNet 26.15 NextGen-O2k Event Photobiology: Algal bioenergetics Innsbruck AT2021-07-15
NextGenO2k logo.jpg
Innsbruck AT, 2021 Jul 15-16. NextGen-O2k Event Photobiology: Algal bioenergetics. MiPNet 26.15.
4th China Symposium on Nerve Control Metabolism 2021 Hangzhou city CN2021-06-18Hangzhou city, CN, 2021 Jun 18-19. The 4th China Symposium on Neuro-Controlled Metabolism.
World summit on Diabetes 2021 Virtual2021-06-16Vitual, 2021 Jun 16-17. World Summit on Diabetes: New technologies and practical approaches: Diabetes and Endocrine disorders
ESCI 2021 Virtual2021-06-09
ESCI
Virtual, 2021 Jun 9-11. 55th Annual Scientific Meeting of the European Society for Clinical Investigation, ESCI 2021.
4th edition Metabolism & Cancer 2021 Virtual2021-05-27Virtual, 2021 May 27-29. 4th edition Metabolism & Cancer.
24th Kalorimetrietage 2021 Braunschweig DE2021-05-26Braunschweig, DE, 2021 May 26-28. 24th Kalorimetrietage
ISAP 2021 Virtual2021-05-14Virtual, 2021 May 14-Aug 13. 7th Conference of the International Society for Applied Phycology - ISAP2021.
Career Event - FH Campus 2021 Wien AT2021-01-26Virtual, 2021 Jan 26. Career Event of the FH Campus Wien.
AlgaEurope 2020 Virtual Event2020-12-01
AlgaeEurope.jpg
Rome, IT, 2020 Dec 1-5. AlgaEurope 2020.
2020 PaduaMuscleDays Padua IT2020-11-19Virtual, 2020 Nov 19-21. PaduaMuscleDays - 30 years of translational research
Analytica China 2020 Shanghai CN2020-11-16Shanghai, CN, 2020 Nov 16-18.Analytica China Exhibition - 10th International Trade Fair for Laboratory Technology, Analysis, Biotechnology and Diagnostics.
Long Night of Research 2020 Virtual Event2020-10-09
LNF.JPG
Virtual Event, 2020 Oct 09. Oroboros at Long Night of Research, CCB. The diagnostic bioenergetic report โ€“ a milestone on the way to mitochondrial fitness and physical well-being.
12th ร–GMBT Annual Meeting 2020 Virtual Event2020-09-21
ร–GMBT
Virtual Event, 2020 Sep 21-23. 12th ร–GMBT Annual Meeting - Biomolecules in/for 21st century
MitoEAGLE WG2 Innsbruck AT2020-03-09
COST Action MitoEAGLE
Innsbruck AT, 2020 Mar 9-13. WG 2 on human skeletal muscle fibers retreat - COST Action MitoEAGLE.
MitoEAGLE WG4 Innsbruck AT2020-02-26
COST Action MitoEAGLE
Innsbruck AT, 2020 Feb 26-28. WG 4 blood cell workshop and retreat - COST Action MitoEAGLE.
MiPNet25.10 Distributor engagement Tokyo JP2020-02-04
NextGenO2k logo.jpg
Tokyo,JP, 2020 Feb 4-7. On-site O2k-Workshop on High-Resolution Respirometry and partner distribution engagement.
MiPNet25.06 IOC145 Innsbruck AT2020-01-27
OROBOROS-solo.png
Innsbruck AT, 2020 Jan 27-29. O2k-Coaching Days - Basic IOC145.
MiPNet25.03 IOC144 Innsbruck AT2020-01-20
OROBOROS-solo.png
Innsbruck AT, 2020 Jan 20-22. O2k-Coaching Days - Basic IOC144.
1st Myocardial Function Symposium 2020 Graz AT2020-01-10Graz, AT, 2020 Jan 10-11. 1st Myocardial Function Symposium: โ€œTargets in cardiometabolic diseaseโ€.
NextGen-O2k SME2 coaching Orily Pratt part 22019-12-03
NextGenO2k logo.jpg
Innsbruck AT, 2019 Dec 03-04 NextGen-O2k SME2 coaching Orily Pratt (part 2), NextGen-O2k SME2.
MiPNet24.15 IOC143 Haryana IN2019-11-15
O2k-Network
Haryana IN, 2019 Nov 15. Oroboros O2k-Workshop on high-resolution respirometry: Assessment of mitochondrial function in health and disease IOC143.
Neurocon 2019 Haryana IN2019-11-15
Neurocon
Haryana, IN. 2019 Nov 15-18, Neurocon 2019.
MiP2019/MitoEAGLE Belgrade RS2019-10-13
COST Action MitoEAGLE
MiPsociety
Belgrade RS, 13-16 Oct 2019. 14th Conference on Mitochondrial Physiology: Mitochondrial function: changes during life cycle and in noncommunicable diseases - COST MitoEAGLE perspectives and MitoEAGLE WG and MC Meeting.
MiPNet24.13 IOC142 Fukuoka JP2019-10-03
O2k-Network
ASMRM & J-mit 2019, Fukuoka JP, 2019 Oct 03 Oroboros Lunch Seminar at ASMRM & J-mit 2019 Fukuoka JP - Explore the Mito-World! (IOC142).
ASMRM & J-mit 2019 Fukuoka JP2019-10-03
ASMRM LOGO.JPG
Fukuoka, JP, 2019 Oct 03-05. Joint ASMRM and J-mit Conference
MiPNet24.02 IOC141 Schroecken AT2019-09-23
NextGenO2k logo.jpg
Schroecken AT, 2019 Sep 23-28 Oroboros O2k-Workshop on high-resolution respirometry (HRR), IOC141.
NextGen-O2k SME2 coaching Samia Kappe part 12019-09-12
NextGenO2k logo.jpg
Innsbruck AT, 2019 Sep 10-11 NextGen-O2k SME2 coaching Samia Kappe (part 1), NextGen-O2k SME2.
FEBS Workshop Ageing 2019 Innsbruck AT2019-09-09
FEBS
Innsbruck, AT. 2019 Sep 09-12, FEBS Workshop โ€œAgeing and Regenerationโ€.
Mitochondrial Physiology โ€ from Organelle to Organism 2019 Copenhagen DK2019-08-19
COST Action MitoEAGLE
Copenhagen DK , 2019 Aug 19-23. Mitochondrial Physiology โ€ from Organelle to Organism
NextGen-O2k SME2 coaching Orily Pratt part 12019-07-22
NextGenO2k logo.jpg
Innsbruck AT, 2019 Jul 22-23 NextGen-O2k SME2 coaching Orily Pratt (part 1), NextGen-O2k SME2.
MiPschool Coimbra 20192019-07-08
COST Action MitoEAGLE
MiPsociety
Coimbra, PT. 2019 Jul 08-11, 12th MiP/MitoEAGLE Training School 2019. Mitochondrial respiratory physiology: Challenges on data sharing, reproducibility, and interpretation.
OroDM01 Innsbruck AT2019-07-01
NextGenO2k logo.jpg
Innsbruck AT, 2019 Jul 01-03 Oroboros Distributor Meeting, OroDM01.
MiPNet24.04 IOC140 Amsterdam NL2019-06-23
O2k-Network
Amsterdam NL, 2019 Jun 23 Pre-conference Oroboros O2k-Workshop on high-resolution respirometry (HRR), IOC140.
MiPNet24.01 IOC139 Schroecken AT2019-06-17
O2k-Workshops.png
Schroecken AT, 2019 June 17-22 Oroboros O2k-Workshop on high-resolution respirometry (HRR), IOC139.


NextGen-O2k dissemination

ClusterAward2019.jpg
Cluster Award 2019
The NextGen-O2k was awarded as the best Tyrolean innovation of the year 2019 with the Cluster Award in the category Life Science. The Cluster Award is funded by the Standortagentur Tirol.


NextGen-O2k press releases


Click to expand or collaps
NextGen-O2k Literature Package - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

Q1: Are you satisfied with the material you received

The following result emerged from all of the feedback responses received:
  • Very satisfied: 71%
  • Satisfied: 29%
  • Neutral: 0%
  • Dissatisfied: 0%
  • Very dissatisfied: 0%

Q2: Feel free to give your feedback

Thanks to the interesting material. I will read it very carefully.
Very useful! Thank you for sharing your research.




MitoEAGLE Q-workshop

MitoFit


Achievements

Project Year 1: In the first year of the NextGen-O2k project, the new Q- and PB-Modules supported by the new architecture of the upgraded DatLab software have been developed and integrated. Additionally, we have successfully partnered with Key Opinion Leaders to begin testing the Q-Module prototypes. Working closely with our subcontractors WGT and H-Tech, key components such as cyclic voltammetry have been integrated into the system.
Project Year 2: During the second year of the project the testing of the PB-Module by algae KOLs began, while testing of the Q-Module continued. Feedback prompted a change in the PB-Sensor that will allow a wider spectrum of research questions to be addressed. Features of the DatLab 8 software were implemented and tested, and SUIT protocols were integrated.

Progress and next steps

See ยป Track record


Gentle Science

In addition to O2k-Workshops and on-site training, Oroboros will disseminate the not-for-profit initiatives on Mitochondrial Physiology and Bioenergetics Science Camps, specialized Mitochondrial Physiology Conferences, and Preprint publications:
ยป Oroboros is a key player in support of the COST Action MitoEAGLE
ยป MitoGlobal - the world-wide platform for societies and organizations supporting mitochondrial research and medicine
ยป MitoEAGLE with cooperation by Oroboros launched MitoFit Preprints - the preprint server for mitochondrial physiology and bioenergetics
ยป A vision on preprints
ยป Mitochondrial respiratory states and rates : >530 coauthors join forces towards harmonization on nomenclature
ยป Gentle Science - recognizes the responsibility of the scientific community - for the quality of science, the quality of life in science, and its mission



Questions.jpg


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MitoPedia: NextGen-O2k

ยป NextGen-O2kยซ
TermAbbreviationDescription
Hydrogen peroxideH2O2
Hydrogen peroxide
Hydrogen peroxide, H2O2 or dihydrogen dioxide, is one of several reactive oxygen intermediates generally referred to as reactive oxygen species (ROS). It is formed in various enzyme-catalyzed reactions (e.g., superoxide dismutase) with the potential to damage cellular molecules and structures. H2O2 is dismutated by catalase to water and oxygen. H2O2 is produced as a signaling molecule in aerobic metabolism and passes membranes more easily compared to other ROS.
Light-enhanced dark respirationLEDRLight-enhanced dark respiration LEDR is a sharp (negative) maximum of dark respiration in plants in response to illumination, measured immediately after switching off the light. LEDR is supported by respiratory substrates produced during photosynthesis and closely reflects light-enhanced photorespiration (Xue et al 1996). Based on this assumption, the total photosynthetic oxygen flux TP is calculated as the sum of the measured net photosynthetic oxygen flux NP plus the absolute value of LEDR.
Mitochondrial membrane potentialmtMP, ฮ”ฮจp+, ฮ”elFep+ [V]The mitochondrial membrane potential difference, mtMP or ฮ”ฮจp+ = ฮ”elFep+, is the electric part of the protonmotive force, ฮ”p = ฮ”mFeH+.
ฮ”elFep+ = ฮ”mFeH+ - ฮ”dFeH+
ฮ”ฮจp+ = ฮ”p - ฮ”ยตH+ยท(zH+ยทF)-1
ฮ”ฮจp+ is the potential difference across the mitochondrial inner membrane (mtIM), expressed in the electric unit of volt [V]. Electric force of the mitochondrial membrane potential is the electric energy change per โ€˜motiveโ€™ charge or per charge moved across the transmembrane potential difference, with the number of โ€˜motiveโ€™ charges expressed in the unit coulomb [C].
NADH-Module
NADH-Module - 12700-01.jpg
The NADH-Module, is a component of the NextGen-O2k for simultaneous measurement of oxygen consumption and NAD(P)H autofluorescence. NAD(P)H autofluorescence is used to evaluate the redox state of the NAD(P)H-pool. The NADH-Module incorporates an UV light and NADH-Sensors which include a photodiode and specific filters.
NADH-Sensor
NADH sesnor 003.png
The NADH-Sensor has been developed as a part of the NADH-Module for simultaneous monitoring of oxygen consumption and NADH redox state. The NADH-Sensor is composed of a photodiode and equipped with three supergel R370 Italian blue filters (Rosco, US).
NextGen-O2k
NextGen-O2k Technical developments
Oxygen kineticsOxygen kinetics describes the dependence of respiration of isolated mitochondria or cells on oxygen partial pressure. Frequently, a strictly hyperbolic kinetics is observed, with two parameters, the oxygen pressure at half-maximum flux, p50, and maximum flux, Jmax. The p50 is in the range of 0.2 to 0.8 kPa for cytochrome c oxidase, isolated mitochondria and small cells, strongly dependent on Jmax and coupling state.
PB Light Source
PB-Sensor.png
The PhotoBiology Light Source (PBLS) has been designed as a part of the PB-Module to provide with an external source of light. This enables experiments for evaluating the production of O2 in the presence of light. The PBLS consists of one LED and one photodiode mounted on the PBLS head protected by a PMMA plastic cover. Three pairs of PBLS (white, blue, and red) are provided with the PB-Module. The light intensity can be regulated from 0 to 2750 ยตmolยทs-1ยทm-2 (red PBLS), from 0 to 3000 ยตmolยทs-1ยทm-2 (blue PBLS), from 0 to 3500 ยตmolยทs-1ยทm-2 (white PBLS). An integrated photodiode provides real-time measurement of the light intensity allowing for continuous adjustment to the desired value.
PB-Module
PB-Module.jpg
The PB-Module has been developed for conducting measurements of PhotoBiology, including photosynthesis. It consists of the PB Light Source and electronic components which are an integral part of the NextGen-O2k. Measurements are recorded and evaluated with the DatLab 8 software.
PhotoBiologyPBPhotoBiology is the science of the effect of light on biological processes. This includes photosynthesis, photochemistry, photophysics, photomorphogenesis, vision, bioluminescence, circadian rhythms and photodynamic therapy. Phototoxicity results from non-ionizing radiation (i.e. ultraviolet, visible and infrared radiation). Non-ionizing radiation is any type of electromagnetic radiation that does not carry enough energy per quantum (photon energy below 10 eV) to completely remove an electron from an atom or molecule. When photons interact with molecules, the molecules can absorb the photon energy and become excited, reacting with surrounding molecules and stimulating "photochemical" and "photophysical" changes. Respiration may be affected by light during photosynthesis or in dark respiration, with the transient response of light-enhanced dark respiration.
PhotodecompositionPDPhotodecomposition or photodegradation is the process of decay of organic material induced by increasing light intensity. Under aerobic conditions, the enhancement of photodecomposition by light intensity can be quantified by oxygen consumption in a controlled light regime.
PhotosynthesisPSPhotosynthesis is the process that converts light energy into chemical energy which is subsequently transformed to the physiological energy demand. Photosynthesis has a light-dependent and light-independent (dark) phase. In plants, algae, and cynobacteria, light energy is absorbed during the light phase by the pigment chlorophyll and used to split water and generate adenosine triphosphate (ATP) and reducing power - nicotinamide adenine dinucleotide phosphate (NADPH), with the net production of O2 as a waste product. During the dark phase ATP and NADPH are used to synthesize carbohydrates from CO2 through the metabolic pathway called Calvin-Benson cycle. Oxygenic photosynthesis is responsible for producing and maintaining the oxygen concentration of the Earthโ€™s atmosphere. In bacteria such as cyanobacteria, photosynthesis involves the plasma membrane and the cytoplasm. In eukaryotic cells (plants and algae), photosynthesis takes place in the chloroplasts.
Q-ModuleQ-Module
Q-box 002.jpg
The Q-Module, developed for measuring the Q redox state and cyclic voltammetry, is supported by the NextGen-O2k and consists of the Q-Sensor, integrated electronic components in the O2k, and the DatLab software.
Q-Sensor
Q stopper.jpg
The Q-Sensor has been designed as a part of the Q-Module for measurements with cyclic voltammetry and voltammetry, allowing for analysis of the Q redox state. The Q-Stopper with the reference electrode is called Q-Sensor, which is plugged in the NextGen-O2k. A three-electrode system is used to detect the Q redox state. Two of the three electrodes (glassy carbon and platinum electrode) are built into the Q-Stopper, while the reference electrode is removable (Reference-Electrode\2.4 mm).
Template NextGen-O2k.jpg


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Bioblast links: Q - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Coenzyme Q
ยป Coenzyme Q
ยป Quinone, Ubiquinone Q; oxidized
ยป Quinol, Ubiquinol QH2; reduced
ยป Semiquinone
ยป Coenzyme Q2
ยป Q-redox state
ยป Q-pools
Mitochondrial pathways, respiratory Complexes, and Q
ยป Q-cycle
ยป Q-junction
ยป Convergent electron flow
ยป NS-pathway
ยป FNS
ยป FNSGp
ยป N-pathway
ยป Reverse electron flow from CII to CI
ยป CI
ยป Rotenone
ยป Amytal
ยป Piericidin
ยป S-pathway
ยป CII
ยป Malonate
ยป F-pathway
ยป CETF, Electron-transferring flavoprotein complex
ยป Gp-pathway
ยป CGpDH, Glycerophosphate dehydrogenase complex
ยป CIII
ยป Myxothiazol
ยป Choline dehydrogenase
ยป Dihydro-orotate dehydrogenase
NextGen-O2k and Q-Module
ยป NextGen-O2k
ยป Q-Module
ยป Q-Sensor
ยป Cyclic voltammetry
ยป Three-electrode system
General
ยป Categories of SUIT protocols
ยป Electron transfer pathway
ยป Electron-transfer-pathway state
ยป F-junction
ยป N-junction



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Bioblast links: NADH - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>


Mitochondrial NADH and respiration

ยป Nicotinamide adenine dinucleotide
ยป NADH electron transfer-pathway state
ยป N-junction
ยป Complex I
ยป Rotenone
ยป Amytal
ยป Piericidin

Mitochondrial NADH production

ยป Tricarboxylic acid cycle
ยป Fatty acid oxidation

NextGen-O2k

ยป NextGen-O2k




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Bioblast links: Hydrogen peroxide - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>



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Bioblast links: ATP production - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>



Phosphorylation pathway

ยป Phosphorylation pathway
ยป ATP synthase
ยป Adenine nucleotide translocase
ยป Phosphate carrier
Phosphorylation pathway substrates
ยป ADP
ยป ATP
ยป Inorganic phosphate
Phosphorylation pathway inhibitors
ยป Oligomycin
ยป Carboxyatractyloside
ยป Atractyloside
ยป Bongkrekik acid

Coupling control

ยป Oxidative phosphorylation
ยป OXPHOS capacity
ยป P-L control efficiency
ยป ROUTINE respiration
ยป R-L control efficiency

Respiratory complexes and coupling

ยป Complex I
ยป Complex III
ยป Complex IV
ยป Proton pump
ยป Electron-transfer-pathway state

ATP production measurement

ยป Magnesium Green



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Bioblast links: pH and protons - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
pH and protons
ยป pH
ยป hydrogen ion H+
ยป hydron H+
ยป hydronium ion H3O+
ยป hydride H-
ยป proton p+
ยป pH buffering capacity
ยป proton flux
ยป proton pump versus hydrogen ion pump
ยป proton leak
ยป proton slip
ยป protonmotive force
O2k-pH
ยป O2k-Catalogue: O2k-pH ISE-Module
ยป O2k-Manual pH electrode: MiPNet23.15 O2k-pH ISE-Module
ยป O2k-SOP: MiPNet08.16 pH calibration
ยป File:PH-Calibration-List.xls
ยป NextGen-O2k, ratiometric: Carboxy SNARF 1
ยป NextGen-O2k, ratiometric: HPTS
ยป pH calibration buffers
O2k-Publications
ยป O2k-Publications: O2k-pH ISE-Module
HRFR - general
ยป O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
ยป O2k signals and output
ยป O2k-SOP: MiPNet14.06 Instrumental O2 background
ยป MiPNet19.18A O2k-Series G: Start
ยป ESD
ยป O2k configuration
ยป O2k control
ยป O2k-FluoRespirometer
ยป O2k-Main Unit#O2k-Series
ยป Titration-Injection microPump
ยป Compare: O2k-TPP+_ISE-Module
DatLab
ยป DatLab 7
ยป MiPNet26.06 DatLab 7: Guide
ยป DatLab 6
ยป MiPNet19.18C DatLab 6: Guide
ยป MiPNet19.18D O2k-Series G and DatLab 6: Calibration
ยป Reference layouts for DatLab graphs



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Bioblast links: Calcium - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>



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Bioblast links: PhotoBiology and plant physiology - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

PhotoBiology: photosynthesis

ยป PhotoBiology
ยป Photosynthesis

Plant physiology: respiration

ยป Photorespiration
ยป Chlororespiration
ยป Light-enhanced dark respiration

NextGen-O2k and PB-Module

ยป NextGen-O2k
ยป PB-Module
ยป PB-Sensor



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MitoPedia:NextGen-O2k