Cookies help us deliver our services. By using our services, you agree to our use of cookies. More information

Difference between revisions of "Living cells"

From Bioblast
(14 intermediate revisions by 3 users not shown)
Line 1: Line 1:
{{MitoPedia
{{MitoPedia
|abbr=vce
|abbr=ce
|description=Cell viability in '''living cells''' should be >95% for various experimental investigations, including cell respirometry. Viable cells (vce) are characterized by an intact plasma membrane barrier function. The total cell count (''N''<sub>ce</sub>) is the sum of viable cells (''N''<sub>vce</sub>) and dead cells (''N''<sub>dce</sub>). In contrast, the cell membrane of cells can be permeabilized selectively by mild detergents ([[digitonin]]), to obtain the [[Mitochondrial preparations |mt-preparation]] of [[permeabilized cells]] used for [[cell ergometry]]. Living cells are frequently labelled as ''intact cells'' in the sense of the total cell count, but ''intact'' may suggest the alternative meaning of ''viable'' or unaffected by a disease or mitochondrial injury.
|description=Cell viability in '''living cells''' should be >95 % for various experimental investigations, including cell respirometry. Viable cells (vce) are characterized by an intact plasma membrane barrier function. The total cell count (''N''<sub>ce</sub>) is the sum of viable cells (''N''<sub>vce</sub>) and dead cells (''N''<sub>dce</sub>). In contrast, the plasma membrane can be permeabilized selectively by mild detergents ([[digitonin]]), to obtain the [[Mitochondrial preparations |mt-preparation]] of [[permeabilized cells]] used for [[cell ergometry]]. Living cells are frequently labelled as ''intact cells'' in the sense of the total cell count, but ''intact'' may suggest dual meanings of ''viable'' or unaffected by a disease or mitochondrial injury.
|info=[[BEC 2020.1]], [[MiPNet08.09 CellRespiration]]
|info=[[BEC 2020.1]], [[Gnaiger 2020 BEC MitoPathways]], [[MiPNet08.09 CellRespiration]]
}}
{{MitoPedia concepts}}
{{MitoPedia methods
|mitopedia method=Respirometry
}}
{{MitoPedia O2k and high-resolution respirometry}}
{{MitoPedia topics
|mitopedia topic=Sample preparation
}}
}}
__TOC__
== HRR and living cells ==
== HRR and living cells ==
::: For details, see  
::: For details, see  
::::* [[Gnaiger 2014 MitoPathways]]
::::* [[Gnaiger 2020 BEC MitoPathways]]
::::* Doerrier C, Garcia-Souza LF, Krumschnabel G, Wohlfarter Y, Mészåros AT, Gnaiger E (2018) High-Resolution FluoRespirometry and OXPHOS protocols for human cells, permeabilized fibers from small biopsies of muscle, and isolated mitochondria. Methods Mol Biol 1782:31-70. - [[Doerrier 2018 Methods Mol Biol| »Bioblast link«]].
::::* Doerrier C, Garcia-Souza LF, Krumschnabel G, Wohlfarter Y, Mészåros AT, Gnaiger E (2018) High-Resolution FluoRespirometry and OXPHOS protocols for human cells, permeabilized fibers from small biopsies of muscle, and isolated mitochondria. Methods Mol Biol 1782:31-70. - [[Doerrier 2018 Methods Mol Biol| »Bioblast link«]].
::::* [[Cell ergometry]]
::::* [[Cell ergometry]]
Line 21: Line 14:


== Respiration medium ==
== Respiration medium ==
:::: The choice of respiratory medium depends on the scientific question and the applied protocol. The advantage of [[cell culture media]] is the availability of substrates (e.g. glucose, glutamine), appropriate ionic composition for maintaining the cell membrane potential and intact signaling (particularly high [Ca<sup>2+</sup>]). Conditions during respiratory measurement can then be maintained close to cell culture conditions.
:::: The choice of respiratory medium depends on the scientific question and the applied protocol. The advantage of [[cell culture media]] is the availability of substrates (e.g. glucose, glutamine), appropriate ionic composition for maintaining the plasma membrane potential and intact signaling (particularly high [Ca<sup>2+</sup>]). Conditions during respiratory measurement can then be maintained close to cell culture conditions.


:::: Respiration of viable cells may be measured in mitochondrial respiration medium (e.g. [[MiR05]]) followed by permeabilization of the cell membrane by digitonin and applying complex [[SUIT]] (substrate-uncoupler-inhibitor titration) protocols. Measuring respiration of permeabilized cells, allowing direct access to the mitochondria, is not possible in cell culture media. These media contain high Ca<sup>2+</sup> concentrations, important for cell physiology, but damaging for mitochondria, which swell and disrupt.  
:::: Respiration of living cells may be measured in mitochondrial respiration medium (e.g. [[MiR05]]) followed by permeabilization of the plasma membrane by digitonin for application of mitochondria-targeted [[SUIT]] (substrate-uncoupler-inhibitor titration) protocols. Measuring respiration of permeabilized cells, allowing direct access to the mitochondria, is not possible in cell culture media. These media contain high Ca<sup>2+</sup> concentrations, important for cell physiology as an extracellular concentration, but damaging for mitochondria which swell and disrupt after permeabilization of the plasma membrane at high Ca<sup>2+</sup> concentrations.  




== Respiratory states ==
== Respiratory states ==
:::: [[ROUTINE]] and [[LEAK]] respiration, [[ET-pathway]] capacity and [[ROX]] can be determined in viable cells (see [[Gnaiger 2014 MitoPathways]]). These respiratory coupling states can be evaluated (''1'') in the absence of external substrates on the basis of internal substrate stores (endogenous respiration), (''2'') in the presence of specific fuel substrates, or (''3'') in complex culture media.
:::: [[ROUTINE]] and [[LEAK respiration]], [[Electron transfer pathway]] capacity and [[ROX]] can be determined in viable cells (see [[Gnaiger 2020 BEC MitoPathways]]). These respiratory coupling states can be evaluated (''1'') in the absence of external substrates on the basis of internal substrate stores (endogenous respiration), (''2'') in the presence of specific fuel substrates, or (''3'') in complex culture media.




== Adherent cells ==
== Adherent cells ==
:::: The lab of [[US IL Springfield Brewer GJ|Gregory Brewer]] developed techniques for high-resolution respirometry with the OROBOROS-O2k of [[Talk:Brewer GJ|neuronal cells attached to a substrate]]: [[Attached_cells|Attached cells]]
:::: The lab of [[US IL Springfield Brewer GJ|Gregory Brewer]] developed techniques for high-resolution respirometry with the Oroboros-O2k of [[Talk:Brewer GJ|neuronal cells attached to a substrate]]: [[Attached_cells|Attached cells]]
::::* [[Jones_2009_ExpNeurol|Jones TT, Brewer GJ (2009) Critical age-related loss of cofactors of neuron cytochrome c oxidase reversed by estrogen.  Exp Neurology 215: 212-219]]
::::* [[Jones_2009_ExpNeurol|Jones TT, Brewer GJ (2009) Critical age-related loss of cofactors of neuron cytochrome c oxidase reversed by estrogen.  Exp Neurology 215: 212-219]]
::::* [[Jones_2010_Biochim_Biophys_Acta|Jones TT, Brewer GJ (2010) Age-related deficiencies in Complex I endogenous substrate availability and reserve capacity of Complex IV in cortical neuron electron transport.  Biochim Biophys Acta Bioenergetics 1797: 167-176]].
::::* [[Jones_2010_Biochim_Biophys_Acta|Jones TT, Brewer GJ (2010) Age-related deficiencies in Complex I endogenous substrate availability and reserve capacity of Complex IV in cortical neuron electron transport.  Biochim Biophys Acta Bioenergetics 1797: 167-176]].
Line 38: Line 31:




== Appropriate cell density for HRR ==
== Appropriate cell-count concentration for HRR ==
:::: The appropriate cell number is cell type and cell size dependent. The sample concentration should be high enough to get a reliable respiration even when mitochondria have a low respiratory activity. On the other hand, if respiration is too high, re-oxygenations have to be performed frequently disturbing the experimental course. As a general guideline:
:::: The appropriate cell-count concentration is cell type and cell size dependent. The sample concentration should be high enough to obtain a reliable respiratory flux per chamber volume, particularly when mitochondria have a low respiratory activity. On the other hand, if volume-specific respiratory flux is too high, re-oxygenations have to be performed frequently disturbing the experimental course. As a general guideline:
::::* Maximum flux up to 100 to 150 pmol.s<sup>-1</sup>.mL<sup>-1</sup>
::::* Maximum flux up to 100 to 300 pmol·s<sup>-1</sup>·mL<sup>-1</sup>; this is most practical, yet far higher flux can be measured accurately in the O2k.
::::* Minimum fluxes at 5 pmol.s<sup>-1</sup>.mL<sup>-1</sup>
::::* Minimum flux at 5 pmol·s<sup>-1</sup>·mL<sup>-1</sup>


:::: ROUTINE respiration per cell may depend on cell density:
:::: ROUTINE respiration per cell may depend on cell concentration:
::::* Steinlechner-Maran R, Eberl T, Kunc M, Margreiter R, Gnaiger E (1996) Oxygen dependence of respiration in coupled and uncoupled endothelial cells. Am J Physiol Cell Physiol 271:C2053-61. - [[Steinlechner-Maran 1996 Am J Physiol Cell Physiol| »Bioblast link«]]
::::* Steinlechner-Maran R, Eberl T, Kunc M, Margreiter R, Gnaiger E (1996) Oxygen dependence of respiration in coupled and uncoupled endothelial cells. Am J Physiol Cell Physiol 271:C2053-61. - [[Steinlechner-Maran 1996 Am J Physiol Cell Physiol| »Bioblast link«]]
=== The units of the cell count and cell-count concentration ===
::::* The [[elementary entity]] of the cell count is the single individual cell or unit cell ''U''<sub>ce</sub>. The abstract unit of the quantity [[count]] is the ''[[elementary unit]]'' x with the meaning of 'one item'. A count is the product of a number and the elementary entity, thus the cell count is ''N''<sub>ce</sub> = ''N''·''U''<sub>ce</sub> [x]. A cell count of 1 million cells is designated as ''N''<sub>ce</sub> = 1·10<sup>6</sup> x = 1 Mx (M = mega = 10<sup>6</sup>).
::::* Cell [[concentration]] can be expressed in terms of various quantities, i.e. cell-mass concentration ''C''<sub>''m''<sub>ce</sub></sub> [g·L<sup>-1</sup> = mg·mL<sup>-1</sup>], cell-volume concentration ''C''<sub>''V''<sub>ce</sub></sub> [mL·L<sup>-1</sup> = ”L·mL<sup>-1</sup>], or cell-count concentration ''C''<sub>ce</sub> [Gx·L<sup>-1</sup> = Mx·mL<sup>-1</sup>] (G=10<sup>9</sup>; M=10<sup>6</sup>). A cell-count concentration ''C''<sub>ce</sub> of 1.0 Mx·mL<sup>-1</sup> equals 10<sup>6</sup> x·mL<sup>-1</sup> = 1.0 million cells per milliliter.
::::» [[Gnaiger MitoFit Preprints 2020.4]], [[BEC 2020.1 doi10.26124bec2020-0001.v1]]




=== Fibroblasts, HUVEC, thymocytes, lymphocytes ===
=== Fibroblasts, HUVEC, thymocytes, lymphocytes ===
:::: 1.0 million cells‱mL<sup>-1</sup> is recommended for many cultured cells, including different cancer or immortalized cell lines. A minimum of 0.1 million cells/mL is required.
:::: A cell-count concentration ''C''<sub>ce</sub> of 1.0 Mx·mL<sup>-1</sup> is recommended for many cultured cells, including different cancer or immortalized cell lines. A minimum of 0.1 Mx·mL<sup>-1</sup> is required in many cell types.


=== Hepatocytes ===
=== Hepatocytes ===
:::: Isolated hepatocytes are quite large, therefore, <0.1 million cells/mL can be applied.
:::: Isolated hepatocytes are quite large, therefore, <0.1 Mx/mL can be applied.


=== Human peripheral blood mononuclear cells ===
=== Human peripheral blood mononuclear cells ===
:::: 2.0 million cells‱mL<sup>-1</sup> is recommended for isolated PBMC. For more information see: [[MiPNet21.17_BloodCellsIsolation|»MiPNet21.17«]]
:::: 2.0 Mx·mL<sup>-1</sup> is recommended for isolated PBMC. For more information see: [[MiPNet21.17_BloodCellsIsolation|»MiPNet21.17«]]


=== Human platelets ===
=== Human platelets ===
:::: 100 million cells‱mL<sup>-1</sup> is recommended for isolated platelets. For more information see: [[MiPNet21.17_BloodCellsIsolation|»MiPNet21.17«]]
:::: 100 Mx·mL<sup>-1</sup> is recommended for isolated platelets. For more information see: [[MiPNet21.17_BloodCellsIsolation|»MiPNet21.17«]]
 


== Cell viability assessment ==
== Cell viability assessment ==


:::: Viability assays are used to measure the proportion of viable cells after a potentially traumatic procedure, such as primary disaggregation, cell separation, or cryopreservation. Most viability tests rely on a breakdown in membrane integrity measured by the uptake of a dye to which the cell is normally impermeable (''e.g.'', Trypan Blue) or the release of a dye normally taken up and retained by viable cells (''e.g.'', acridine orange & propidium iodide).
:::: Viability assays are used to measure the proportion of viable cells after a potentially traumatic procedure, such as primary disaggregation, cell separation, or cryopreservation. Most viability tests rely on a breakdown in membrane integrity measured by the uptake of a dye to which the cell is normally impermeable (''e.g.'', Trypan Blue) or the release of a dye normally taken up and retained by viable cells (''e.g.'', acridine orange & propidium iodide).
Line 66: Line 65:
=== Trypan blue ===
=== Trypan blue ===


:::: Trypan blue is a vital dye. The reactivity of trypan blue is based on the fact that the chromophore is negatively charged and does not interact with the cell unless the membrane is damaged. Therefore, all the cells which exclude the dye are viable.
:::: Trypan blue is a dye used for vital staining. The reactivity of trypan blue is based on the fact that the chromophore is negatively charged and does not interact with the cell nucleus unless the membrane is damaged. Therefore, all cells which exclude the dye are viable.


=== Acridine orange & propidium iodide ===
=== Acridine orange & propidium iodide ===
Line 75: Line 74:
== [[SUITbrowser]] question: Cell viability test ==
== [[SUITbrowser]] question: Cell viability test ==


:::: Plasma membrane intactness can be assessed by [[SUIT]] protocols with the use of substrates that are not cell membrane permeant. With further chemical permeabilization of the cells, it is possible to determine the respirometric viability index, assuming that both viable and dead cells contain functional mitochondria.  
:::: Plasma membrane intactness of living cells can be assessed by [[SUIT]] protocols with the use of substrates that are not plasma membrane permeant. With further chemical permeabilization of the plasma membranes, it is possible to determine the respirometric viability index, assuming that both viable and dead cells contain functional mitochondria.  
:::: The [https://suitbrowser.oroboros.at/ SUITbrowser] can be used to find SUIT protocols for testing cell viability and other research questions.
:::: The [https://suitbrowser.oroboros.at/ SUITbrowser] can be used to find SUIT protocols for testing cell viability and other research questions.
== References ==
{{#ask:[[Additional label::Living cells]]
| mainlabel=Bioblast link
|?Has title=Reference
|?Was published in year=Year
|format=broadtable
|limit=5000
|offset=0
|sort=Has title
|order=ascending
}}
{{Template:Oroboros QM}} [[Gnaiger Erich]] 2020-09-07
{{MitoPedia methods
|mitopedia method=Respirometry
}}
{{MitoPedia O2k and high-resolution respirometry
|mitopedia O2k and high-resolution respirometry=O2k-Open Support
}}
{{MitoPedia topics
|mitopedia topic=Sample preparation
}}

Revision as of 15:21, 1 March 2021


high-resolution terminology - matching measurements at high-resolution


Living cells

Description

Cell viability in living cells should be >95 % for various experimental investigations, including cell respirometry. Viable cells (vce) are characterized by an intact plasma membrane barrier function. The total cell count (Nce) is the sum of viable cells (Nvce) and dead cells (Ndce). In contrast, the plasma membrane can be permeabilized selectively by mild detergents (digitonin), to obtain the mt-preparation of permeabilized cells used for cell ergometry. Living cells are frequently labelled as intact cells in the sense of the total cell count, but intact may suggest dual meanings of viable or unaffected by a disease or mitochondrial injury.

Abbreviation: ce

Reference: BEC 2020.1, Gnaiger 2020 BEC MitoPathways, MiPNet08.09 CellRespiration

HRR and living cells

For details, see


Respiration medium

The choice of respiratory medium depends on the scientific question and the applied protocol. The advantage of cell culture media is the availability of substrates (e.g. glucose, glutamine), appropriate ionic composition for maintaining the plasma membrane potential and intact signaling (particularly high [Ca2+]). Conditions during respiratory measurement can then be maintained close to cell culture conditions.
Respiration of living cells may be measured in mitochondrial respiration medium (e.g. MiR05) followed by permeabilization of the plasma membrane by digitonin for application of mitochondria-targeted SUIT (substrate-uncoupler-inhibitor titration) protocols. Measuring respiration of permeabilized cells, allowing direct access to the mitochondria, is not possible in cell culture media. These media contain high Ca2+ concentrations, important for cell physiology as an extracellular concentration, but damaging for mitochondria which swell and disrupt after permeabilization of the plasma membrane at high Ca2+ concentrations.


Respiratory states

ROUTINE and LEAK respiration, Electron transfer pathway capacity and ROX can be determined in viable cells (see Gnaiger 2020 BEC MitoPathways). These respiratory coupling states can be evaluated (1) in the absence of external substrates on the basis of internal substrate stores (endogenous respiration), (2) in the presence of specific fuel substrates, or (3) in complex culture media.


Adherent cells

The lab of Gregory Brewer developed techniques for high-resolution respirometry with the Oroboros-O2k of neuronal cells attached to a substrate: Attached cells
In most cases, adherent cells grown as a monolayer are detached from the culture plate (scrapping or trypsinizing), centrifuged and resuspended for HRR.


Appropriate cell-count concentration for HRR

The appropriate cell-count concentration is cell type and cell size dependent. The sample concentration should be high enough to obtain a reliable respiratory flux per chamber volume, particularly when mitochondria have a low respiratory activity. On the other hand, if volume-specific respiratory flux is too high, re-oxygenations have to be performed frequently disturbing the experimental course. As a general guideline:
  • Maximum flux up to 100 to 300 pmol·s-1·mL-1; this is most practical, yet far higher flux can be measured accurately in the O2k.
  • Minimum flux at 5 pmol·s-1·mL-1
ROUTINE respiration per cell may depend on cell concentration:
  • Steinlechner-Maran R, Eberl T, Kunc M, Margreiter R, Gnaiger E (1996) Oxygen dependence of respiration in coupled and uncoupled endothelial cells. Am J Physiol Cell Physiol 271:C2053-61. - »Bioblast link«


The units of the cell count and cell-count concentration

  • The elementary entity of the cell count is the single individual cell or unit cell Uce. The abstract unit of the quantity count is the elementary unit x with the meaning of 'one item'. A count is the product of a number and the elementary entity, thus the cell count is Nce = N·Uce [x]. A cell count of 1 million cells is designated as Nce = 1·106 x = 1 Mx (M = mega = 106).
  • Cell concentration can be expressed in terms of various quantities, i.e. cell-mass concentration Cmce [g·L-1 = mg·mL-1], cell-volume concentration CVce [mL·L-1 = ”L·mL-1], or cell-count concentration Cce [Gx·L-1 = Mx·mL-1] (G=109; M=106). A cell-count concentration Cce of 1.0 Mx·mL-1 equals 106 x·mL-1 = 1.0 million cells per milliliter.
» Gnaiger MitoFit Preprints 2020.4, BEC 2020.1 doi10.26124bec2020-0001.v1


Fibroblasts, HUVEC, thymocytes, lymphocytes

A cell-count concentration Cce of 1.0 Mx·mL-1 is recommended for many cultured cells, including different cancer or immortalized cell lines. A minimum of 0.1 Mx·mL-1 is required in many cell types.

Hepatocytes

Isolated hepatocytes are quite large, therefore, <0.1 Mx/mL can be applied.

Human peripheral blood mononuclear cells

2.0 Mx·mL-1 is recommended for isolated PBMC. For more information see: »MiPNet21.17«

Human platelets

100 Mx·mL-1 is recommended for isolated platelets. For more information see: »MiPNet21.17«


Cell viability assessment

Viability assays are used to measure the proportion of viable cells after a potentially traumatic procedure, such as primary disaggregation, cell separation, or cryopreservation. Most viability tests rely on a breakdown in membrane integrity measured by the uptake of a dye to which the cell is normally impermeable (e.g., Trypan Blue) or the release of a dye normally taken up and retained by viable cells (e.g., acridine orange & propidium iodide).

Trypan blue

Trypan blue is a dye used for vital staining. The reactivity of trypan blue is based on the fact that the chromophore is negatively charged and does not interact with the cell nucleus unless the membrane is damaged. Therefore, all cells which exclude the dye are viable.

Acridine orange & propidium iodide

Acridine orange is an intercalating dye that can permeate both live and dead cells. Acridine orange will stain all nucleated cells to generate green fluorescence. Propidium iodide can only enter dead cells with poor membrane integrity so it will stain all dead nucleated cells to generate red fluorescence. Cells stained with both acridine orange and propidium iodide fluoresce red due to quenching, so all live nucleated cells fluoresce green and all dead nucleated cells fluoresce red.


SUITbrowser question: Cell viability test

Plasma membrane intactness of living cells can be assessed by SUIT protocols with the use of substrates that are not plasma membrane permeant. With further chemical permeabilization of the plasma membranes, it is possible to determine the respirometric viability index, assuming that both viable and dead cells contain functional mitochondria.
The SUITbrowser can be used to find SUIT protocols for testing cell viability and other research questions.

References

Bioblast linkReferenceYear
Gnaiger E (2020) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 5th ed. Bioenerg Commun 2020.2. https://doi.org/10.26124/bec:2020-00022020
Gnaiger E et al ― MitoEAGLE Task Group (2020) Mitochondrial physiology. Bioenerg Commun 2020.1. https://doi.org/10.26124/bec:2020-0001.v12020
Quality management

Oroboros quality management from the O2k to NextGen-O2k
Gnaiger Erich 2020-09-07


MitoPedia methods: Respirometry 


MitoPedia O2k and high-resolution respirometry: O2k-Open Support 


MitoPedia topics: Sample preparation