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Difference between revisions of "MitoPedia"

From Bioblast
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'''»[[MitoPedia: Terms and abbreviations]]''' - IUPAC guidelines are followed for general terms of physical chemistry<ref>Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry, IUPAC Green Book, 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. - [[Cohen 2008 IUPAC Green Book |»Bioblast Access«]]</ref>,<ref>International Union of Biochemistry and Molecular Biology: Recommendations for terminology and databases for biochemical thermodynamics. - [http://www.chem.qmul.ac.uk/iubmb/thermod2/ »Open Access«]</ref>,<ref>International Union of Biochemistry (1981) Symbolism and terminology in enzyme kinetics. - [http://www.chem.qmul.ac.uk/iubmb/kinetics/ »Open Access«]</ref>, extended by concepts of nonequilibrium thermodynamics.<ref>Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. - [[Gnaiger 1993 Pure Appl Chem |»Bioblast Access«]]</ref>.
'''»[[MitoPedia: Terms and abbreviations]]''' - IUPAC guidelines are followed for general terms of physical chemistry<ref>Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry, IUPAC Green Book, 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. - [[Cohen 2008 IUPAC Green Book |»Bioblast link«]]</ref>,<ref>International Union of Biochemistry and Molecular Biology: Recommendations for terminology and databases for biochemical thermodynamics. - [http://www.chem.qmul.ac.uk/iubmb/thermod2/ »Open Access«]</ref>,<ref>International Union of Biochemistry (1981) Symbolism and terminology in enzyme kinetics. - [http://www.chem.qmul.ac.uk/iubmb/kinetics/ »Open Access«]</ref>, extended by concepts of nonequilibrium thermodynamics.<ref>Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. - [[Gnaiger 1993 Pure Appl Chem |»Bioblast link«]]</ref>.
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=== MitoPedia: Concepts ===
=== MitoPedia: Concepts ===
: »[[MitoPedia: Respiratory states]]<ref> Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. OROBOROS MiPNet Publications, Innsbruck:80 pp. - [[Gnaiger 2014 MitoPathways |»Bioblast Access«]]</ref>
: »[[MitoPedia: Respiratory states]]<ref> Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. OROBOROS MiPNet Publications, Innsbruck:80 pp. - [[Gnaiger 2014 MitoPathways |»Bioblast link«]]</ref>
: »[[MitoPedia: Respiratory substrate-coupling states]]
: »[[MitoPedia: Respiratory substrate-coupling states]]
: »[[MitoPedia: Respiratory control ratios]]
: »[[MitoPedia: Respiratory control ratios]]
: »[[Mitochondria and bioblasts: Made history]]


=== MitoPedia: Methods ===
=== MitoPedia: Methods ===
: »[[MitoPedia: SUIT protocols]]
: »[[MitoPedia: Respirometry]]
: »[[MitoPedia: Respirometry]]
: »[[MitoPedia: Fluorometry]]
: »[[MitoPedia: Fluorometry]]
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=== MitoPedia: Biochemistry ===
=== MitoPedia: Biochemistry ===
: »[[MitoPedia: Substrates and metabolites]]<ref> Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibres from small biopisies of human muscle. Methods Mol Biol 810:25-58. - [[Pesta 2012 Methods Mol Biol |»Bioblast Access«]]</ref>
: »[[MitoPedia: Substrates and metabolites]]<ref> Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibres from small biopisies of human muscle. Methods Mol Biol 810:25-58. - [[Pesta 2012 Methods Mol Biol |»Bioblast link«]]</ref>
: »[[MitoPedia: Uncouplers]]
: »[[MitoPedia: Uncouplers]]
: »[[MitoPedia: Inhibitors]]
: »[[MitoPedia: Inhibitors]]
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: »[[MitoPedia: Media for respirometry]]
: »[[MitoPedia: Media for respirometry]]
: »[[MitoPedia: Enzymes]]<ref>International Union of Biochemistry (1991) Nomenclature of electron-transfer proteins. Biochim Biophys Acta 1060. - [http://www.chem.qmul.ac.uk/iubmb/etp/ »Open Access«]</ref>
: »[[MitoPedia: Enzymes]]<ref>International Union of Biochemistry (1991) Nomenclature of electron-transfer proteins. Biochim Biophys Acta 1060. - [http://www.chem.qmul.ac.uk/iubmb/etp/ »Open Access«]</ref>
: »[[Mitochondria and bioblasts: Made history]]


=== MitoPedia: Links ===  
=== MitoPedia: Links ===  

Revision as of 06:11, 24 January 2016

MitoPedia

Development of a consistent nomenclature in mitochondrial physiology, in the spirit of Gentle Science
MitoPedia


High-resolution terminology - matching measurements at high-resolution

»MitoPedia: Terms and abbreviations - IUPAC guidelines are followed for general terms of physical chemistry[1],[2],[3], extended by concepts of nonequilibrium thermodynamics.[4].



MitoPedia: Concepts

»MitoPedia: Respiratory states[5]
»MitoPedia: Respiratory substrate-coupling states
»MitoPedia: Respiratory control ratios

MitoPedia: Methods

»MitoPedia: SUIT protocols
»MitoPedia: Respirometry
»MitoPedia: Fluorometry
»MitoPedia: Spectrophotometry

MitoPedia: Biochemistry

»MitoPedia: Substrates and metabolites[6]
»MitoPedia: Uncouplers
»MitoPedia: Inhibitors
»MitoPedia: Permeabilization agents
»MitoPedia: Media for respirometry
»MitoPedia: Enzymes[7]
»Mitochondria and bioblasts: Made history

MitoPedia: Links

»List of Links - Mitochondria: Structure and Function
»Mitochondrial Global Network: List of MitoGlobal Organizations

OROBOROS

» O2k-Protocols
» O2k-Publications: Topics
MitoPedia
Bioblast wiki

MitoPedia and Bioblast

The term MitoPedia expresses the link to Wikipedia. We use the MediaWiki software for generating a bottom-up database and glossaries. The 'Bioblast community' of mitochondrial experts is cordially invited to active participation - a vision that may develop further in the future. To make this possible, the OROBOROS-Team continues to work on the Bioblast website as an information synthase - in the spirit of Gentle Science. --Gnaiger Erich 09:20, 18 May 2014 (CEST)


MitoPedia - high-resolution terminology, matching measurements at high-resolution



MitoPedia term: Dihydro-orotate dehydrogenase - another respiratory Complex at the Q-junction.


» Respiratory control ratios beyond the RCR - coupling:

P-L control efficiency P-L control efficiency,

R-L control efficiency R-L control efficiency,

E-L coupling efficiency E-L coupling efficiency.


MitoPathways 2020

MitoPathways - The Blue Book


» HRR - high-resolution respirometry was established in 1995. This is the first comprehensive methodological summary: Control of mitochondrial and cellular respiration by oxygen. J Bioenerg Biomembr (1995)


References

  1. Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry, IUPAC Green Book, 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. - »Bioblast link«
  2. International Union of Biochemistry and Molecular Biology: Recommendations for terminology and databases for biochemical thermodynamics. - »Open Access«
  3. International Union of Biochemistry (1981) Symbolism and terminology in enzyme kinetics. - »Open Access«
  4. Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. - »Bioblast link«
  5. Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. OROBOROS MiPNet Publications, Innsbruck:80 pp. - »Bioblast link«
  6. Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibres from small biopisies of human muscle. Methods Mol Biol 810:25-58. - »Bioblast link«
  7. International Union of Biochemistry (1991) Nomenclature of electron-transfer proteins. Biochim Biophys Acta 1060. - »Open Access«