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Difference between revisions of "MitoPedia"

From Bioblast
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'''»[[MitoPedia: Terms and abbreviations]]''' - IUPAC guidelines are followed for general terms of physical chemistry<ref>Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry, IUPAC Green Book, 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. [[Cohen 2008 IUPAC Green Book |»Open Access]]«</ref>,<ref>International Union of Biochemistry and Molecular Biology: Recommendations for terminology and databases for biochemical thermodynamics. [http://www.chem.qmul.ac.uk/iubmb/thermod2/ »Open Access]«</ref>,<ref>International Union of Biochemistry (1981) Symbolism and terminology in enzyme kinetics. [http://www.chem.qmul.ac.uk/iubmb/kinetics/ »Open Access]«</ref>, extended by concepts of nonequilibrium thermodynamics.<ref>Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. [[Gnaiger 1993 Pure Appl Chem |»Open Access]]«</ref>.
'''»[[MitoPedia: Terms and abbreviations]]''' - IUPAC guidelines are followed for general terms of physical chemistry<ref>Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry, IUPAC Green Book, 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. [[Cohen 2008 IUPAC Green Book |»Open Access«]]</ref>,<ref>International Union of Biochemistry and Molecular Biology: Recommendations for terminology and databases for biochemical thermodynamics. [http://www.chem.qmul.ac.uk/iubmb/thermod2/ »Open Access«]</ref>,<ref>International Union of Biochemistry (1981) Symbolism and terminology in enzyme kinetics. [http://www.chem.qmul.ac.uk/iubmb/kinetics/ »Open Access«]</ref>, extended by concepts of nonequilibrium thermodynamics.<ref>Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. [[Gnaiger 1993 Pure Appl Chem |»Open Access«]]</ref>.
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=== MitoPedia: Concepts ===
=== MitoPedia: Concepts ===
: »[[MitoPedia: Respiratory states]]<ref> Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. OROBOROS MiPNet Publications, Innsbruck:80 pp. [[Gnaiger 2014 MitoPathways |»Open Access]]«</ref>
: »[[MitoPedia: Respiratory states]]<ref> Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. OROBOROS MiPNet Publications, Innsbruck:80 pp. [[Gnaiger 2014 MitoPathways |»Open Access«]]</ref>
: »[[MitoPedia: Respiratory control ratios]]
: »[[MitoPedia: Respiratory control ratios]]
: »[[Mitochondria and bioblasts: Made history]]
: »[[Mitochondria and bioblasts: Made history]]
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=== MitoPedia: Biochemistry ===
=== MitoPedia: Biochemistry ===
: »[[MitoPedia: Substrates and metabolites]]<ref> Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibres from small biopisies of human muscle. Methods Mol Biol 810:25-58. [[Pesta 2012 Methods Mol Biol |»Bioblast Access]]«</ref>
: »[[MitoPedia: Substrates and metabolites]]<ref> Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibres from small biopisies of human muscle. Methods Mol Biol 810:25-58. [[Pesta 2012 Methods Mol Biol |»Bioblast Access«]]</ref>
: »[[MitoPedia: Uncouplers]]
: »[[MitoPedia: Uncouplers]]
: »[[MitoPedia: Inhibitors]]
: »[[MitoPedia: Inhibitors]]
: »[[MitoPedia: Permeabilization agents]]
: »[[MitoPedia: Permeabilization agents]]
: »[[MitoPedia: Media for respirometry]]
: »[[MitoPedia: Media for respirometry]]
: »[[MitoPedia: Enzymes]]<ref>International Union of Biochemistry (1991) Nomenclature of electron-transfer proteins. Biochim Biophys Acta 1060. [http://www.chem.qmul.ac.uk/iubmb/etp/ »Open Access]«</ref>
: »[[MitoPedia: Enzymes]]<ref>International Union of Biochemistry (1991) Nomenclature of electron-transfer proteins. Biochim Biophys Acta 1060. [http://www.chem.qmul.ac.uk/iubmb/etp/ »Open Access«]</ref>


=== MitoPedia: Links ===  
=== MitoPedia: Links ===  

Revision as of 09:54, 24 April 2015

MitoPedia

Development of a consistent nomenclature in mitochondrial physiology, in the spirit of Gentle Science



MitoPedia


High-resolution terminology - matching measurements at high-resolution

»MitoPedia: Terms and abbreviations - IUPAC guidelines are followed for general terms of physical chemistry[1],[2],[3], extended by concepts of nonequilibrium thermodynamics.[4].



MitoPedia: Concepts

»MitoPedia: Respiratory states[5]
»MitoPedia: Respiratory control ratios
»Mitochondria and bioblasts: Made history

MitoPedia: Methods

»MitoPedia: Respirometry
»MitoPedia: Fluorometry
»MitoPedia: Spectrophotometry

MitoPedia: Biochemistry

»MitoPedia: Substrates and metabolites[6]
»MitoPedia: Uncouplers
»MitoPedia: Inhibitors
»MitoPedia: Permeabilization agents
»MitoPedia: Media for respirometry
»MitoPedia: Enzymes[7]

MitoPedia: Links

»List of Links - Mitochondria: Structure and Function
»Mitochondrial Global Network: List of MitoGlobal Organizations

OROBOROS

» O2k-Protocols
» O2k-Publications: Topics

References

  1. Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry, IUPAC Green Book, 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. »Open Access«
  2. International Union of Biochemistry and Molecular Biology: Recommendations for terminology and databases for biochemical thermodynamics. »Open Access«
  3. International Union of Biochemistry (1981) Symbolism and terminology in enzyme kinetics. »Open Access«
  4. Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. »Open Access«
  5. Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. OROBOROS MiPNet Publications, Innsbruck:80 pp. »Open Access«
  6. Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibres from small biopisies of human muscle. Methods Mol Biol 810:25-58. »Bioblast Access«
  7. International Union of Biochemistry (1991) Nomenclature of electron-transfer proteins. Biochim Biophys Acta 1060. »Open Access«