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Difference between revisions of "O2k-Publications: Topics"

From Bioblast
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| [[O2k-Publications: Human|Human]]  
| [[O2k-Publications: Chicken|Chicken]]  
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|(» [[O2k-Publications: Birds|Birds]])
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Human]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Chicken]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Mammal and model::Human]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Mammal and model::Chicken]] |format=count}}  
|-  
|-  
| 2
| 2
| [[O2k-Publications: Pig|Pig]]
| [[O2k-Publications: Zebrafish|Zebrafish]]  
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|(» [[O2k-Publications: Fishes|Fishes]])
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Pig]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Zebrafish]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Mammal and model::Pig]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Mammal and model::Zebrafish]] |format=count}}  
|-  
|-  
| 3
| 3
| [[O2k-Publications: Horse|Horse]]
| [[O2k-Publications: Drosophila|Drosophila]]  
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Horse]] |format=count}}  
| style="text-align:left"|(» [[O2k-Publications: Hexapods|Hexapods]])
| {{#ask:[[Category:Publications]] [[Mammal and model::Horse]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Drosophila]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Mammal and model::Drosophila]] |format=count}}  
|-  
|-  
| 4
| 4
| [[O2k-Publications: Bovines|Bovines]]  
| [[O2k-Publications: Caenorhabditis elegans|Caenorhabditis elegans]]  
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Bovines]] |format=count}}  
| style="text-align:left"|(» [[O2k-Publications: Nematodes|Nematodes]])
| {{#ask:[[Category:Publications]] [[Mammal and model::Bovines]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Caenorhabditis elegans]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Mammal and model::Caenorhabditis elegans]] |format=count}}  
|-  
|-  
| 5
| 5
| [[O2k-Publications: Cat|Cat]]
| [[O2k-Publications: Artemia|Artemia]]  
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|(» [[O2k-Publications: Crustaceans|Crustaceans]])
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Cat]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Artemia]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Mammal and model::Cat]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Mammal and model::Artemia]] |format=count}}  
|-  
|-  
| 6
| 6
| [[O2k-Publications: Dog|Dog]]
| [[O2k-Publications: Saccharomyces cerevisiae|Saccharomyces cerevisiae]]
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Dog]] |format=count}}  
| style="text-align:left"|(» [[O2k-Publications: Fungi|Fungi]])
| {{#ask:[[Category:Publications]] [[Mammal and model::Dog]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Saccharomyces cerevisiae]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Mammal and model::Saccharomyces cerevisiae]] |format=count}}  
|-
|-
| 7
| 7
| [[O2k-Publications: Rabbit|Rabbit]]  
| [[O2k-Publications: Comparative MiP;environmental MiP|Comparative MiP]]  
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Rabbit]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[MiP area::Comparative MiP;environmental MiP]] |format=count}}  
| {{#ask:[[Category:Publications]] [[Mammal and model::Rabbit]] |format=count}}  
| {{#ask:[[Category:Publications]] [[MiP area::Comparative MiP;environmental MiP]] |format=count}}  
|-  
|-  
|}
|}
* [[O2k-Publications: Chicken|Chicken]] (» [[O2k-Publications: Birds|Birds]])
 
* [[O2k-Publications: Zebrafish|Zebrafish]] (» [[O2k-Publications: Fishes|Fishes]])
* [[O2k-Publications: Drosophila|Drosophila]] (» [[O2k-Publications: Hexapods|Hexapods]])
* [[O2k-Publications: Caenorhabditis elegans|Caenorhabditis elegans]] (» [[O2k-Publications: Nematodes|Nematodes]])
* [[O2k-Publications: Artemia|Artemia]] (» [[O2k-Publications: Crustaceans|Crustaceans]])
* [[O2k-Publications: Saccharomyces cerevisiae|Saccharomyces cerevisiae]] (» [[O2k-Publications: Fungi|Fungi]])
* [[O2k-Publications: Comparative MiP;environmental MiP|Comparative MiP]]


:: '''Non-mammals'''
:: '''Non-mammals'''
* [[O2k-Publications: Birds|Birds]] (» [[O2k-Publications: Chicken|Chicken]])
::::{| class="wikitable sortable" style="text-align:center"
* [[O2k-Publications: Reptiles|Reptiles]] - turtles, lizards, snakes, crocodiles, alligators
! #
* [[O2k-Publications: Amphibians|Amphibians]] - frogs, toads, salamanders
! O2k-Publications
* [[O2k-Publications: Fishes|Fishes]] - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » [[O2k-Publications: Zebrafish|Zebrafish]]
! MitoPedia:
* [[O2k-Publications: Hexapods|Hexapods]] - insects, springtails; » [[O2k-Publications: Drosophila|Drosophila]]
! Comment
* [[O2k-Publications: Crustaceans|Crustaceans]] - crabs, shrimp, barnacles, etc.; » [[O2k-Publications: Artemia|Artemia]]
! O2k
* [[O2k-Publications: Annelids|Annelids]] - polychaetes, e.g. lugworm ''Arenicola marina'', oligochaetes, leeches  
! Total
* [[O2k-Publications: Molluscs|Molluscs]] - gastropods, cephalopods, bivalves
|-
* [[O2k-Publications: Nematodes|Nematodes]] » [[O2k-Publications: Caenorhabditis elegans|Caenorhabditis elegans]]
| 1
* [[O2k-Publications: Other invertebrates|Other invertebrates]] - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
| [[O2k-Publications: Birds|Birds]]  
* [[O2k-Publications: Fungi|Fungi]] - yeast, molds, mushrooms, etc.; » [[O2k-Publications: Saccharomyces cerevisiae|Saccharomyces cerevisiae]]
| style="text-align:left"|
* [[O2k-Publications: Plants|Plants]]
| style="text-align:left"|(» [[O2k-Publications: Chicken|Chicken]])  
* [[O2k-Publications: Protists|Protists]] - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Birds]] |format=count}}
* [[O2k-Publications: Eubacteria|Eubacteria]] - true bacteria, cyanobacteria, spirochetes
| {{#ask:[[Category:Publications]] [[Mammal and model::Birds]] |format=count}}
* [[O2k-Publications: Archaea|Archaea]] - archaebacteria
|-
| 2
| [[O2k-Publications: Reptiles|Reptiles]]  
| style="text-align:left"|
| style="text-align:left"| turtles, lizards, snakes, crocodiles, alligators
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Reptiles]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Reptiles]] |format=count}}
|-
| 3
| [[O2k-Publications: Amphibians|Amphibians]]  
| style="text-align:left"|
| style="text-align:left"| frogs, toads, salamanders
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Amphibians]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Amphibians]] |format=count}}
|-
| 4
| [[O2k-Publications: Fishes|Fishes]]  
| style="text-align:left"|
| style="text-align:left"| bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » [[O2k-Publications: Zebrafish|Zebrafish]]
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Fishes]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Fishes]] |format=count}}
|-
| 5
| [[O2k-Publications: Hexapods|Hexapods]]  
| style="text-align:left"|
| style="text-align:left"| insects, springtails; » [[O2k-Publications: Drosophila|Drosophila]]
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Hexapods]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Hexapods]] |format=count}}
|-
| 6
| [[O2k-Publications: Crustaceans|Crustaceans]]  
| style="text-align:left"|
| style="text-align:left"| crabs, shrimp, barnacles, etc.; » [[O2k-Publications: Artemia|Artemia]]
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Crustaceans]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Crustaceans]] |format=count}}
|-
| 7
| [[O2k-Publications: Annelids|Annelids]]  
| style="text-align:left"|
| style="text-align:left"| polychaetes, e.g. lugworm ''Arenicola marina'', oligochaetes, leeches
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Annelids]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Annelids]] |format=count}}
|-
| 8
| [[O2k-Publications: Molluscs|Molluscs]]  
| style="text-align:left"|
| style="text-align:left"| gastropods, cephalopods, bivalves
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Molluscs]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Molluscs]] |format=count}}
|-
| 9
| [[O2k-Publications: Nematodes|Nematodes]]  
| style="text-align:left"|
| style="text-align:left"|» [[O2k-Publications: Caenorhabditis elegans|Caenorhabditis elegans]]
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Nematodes]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Nematodes]] |format=count}}
|-
| 10
| [[O2k-Publications: Other invertebrates|Other invertebrates]]  
| style="text-align:left"|
| style="text-align:left"|urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Other invertebrates]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Other invertebrates]] |format=count}}
|-
| 11
| [[O2k-Publications: Fungi|Fungi]]  
| style="text-align:left"|
| style="text-align:left"|yeast, molds, mushrooms, etc.; » [[O2k-Publications: Saccharomyces cerevisiae|Saccharomyces cerevisiae]]  
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Fungi]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Fungi]] |format=count}}
|-
| 12
| [[O2k-Publications: Plants|Plants]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Plants]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Plants]] |format=count}}
|-
| 13
| [[O2k-Publications: Protists|Protists]]  
| style="text-align:left"|
| style="text-align:left"|amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Protists]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Protists]] |format=count}}
|-
| 14
| [[O2k-Publications: Eubacteria|Eubacteria]]
| style="text-align:left"|
| style="text-align:left"|true bacteria, cyanobacteria, spirochetes  
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Eubacteria ]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Eubacteria]] |format=count}}
|-
| 15
| [[O2k-Publications: Archaea|Archaea]]  
| style="text-align:left"|
| style="text-align:left"|archaebacteria
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Mammal and model::Archaea]] |format=count}}
| {{#ask:[[Category:Publications]] [[Mammal and model::Archaea]] |format=count}}
|-
|}




Revision as of 15:21, 11 November 2016

                

O2k-Publications: Topics

Mitochondria and cell research
O2k-Publications: chronological
Publications in the MiPMap


See also » O2k-Publications - chronological: 4691


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (363 entries) 363 516
2 Exercise physiology;nutrition;life style 754 1048
3 Comparative MiP;environmental MiP 323 475
4 Pharmacology;toxicology 843 1040
5 mt-Biogenesis;mt-density 248 331
6 Genetic knockout;overexpression 651 720
7 Instruments;methods 273 14523<ul><li>"[MiP area" contains a listed "[" character as part of the property label and has therefore been classified as invalid.</li> <!--br--><li>The part "Instruments;methods" of the query was not understood.Results might not be as expected.</li> <!--br--><li>The part "]]" of the query was not understood.Results might not be as expected.</li></ul>


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 274 416
2 Alzheimer's 71 94
3 Autism 7 11
4 Cancer 356 514
5 Cardiovascular 207 289
6 COPD 10 13
7 Diabetes 347 465
8 Inherited 64 99
9 Infectious 50 69
10 Myopathy 77 89
11 Neurodegenerative 169 235
12 Obesity 253 420
13 Parkinson's 67 104
14 Sepsis 74 85
15 Other 288 360


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 93 156
2 Cryopreservation 41 67
3 Hypoxia 116 227
4 Ischemia-reperfusion 326 433
5 Mitochondrial disease 150 211
6 Oxidative stress;RONS 580 837
7 Permeability transition 71 96
8 Temperature: hypothermia; hyperthermia] 91 112


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1449 2060
2 Pig 89 103
3 Horse 27 34
4 Bovines 24 76
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1370 1599
9 Rat 874 1130
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 53 84
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken (» Birds) 5 7
2 Zebrafish (» Fishes) 15 22
3 Drosophila (» Hexapods) 65 91
4 Caenorhabditis elegans (» Nematodes) 24 33
5 Artemia (» Crustaceans) 12 19
6 Saccharomyces cerevisiae (» Fungi) 61 88
7 Comparative MiP 323 475


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds (» Chicken) 15 27
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153
5 Hexapods insects, springtails; » Drosophila 34 43
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 25 42
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 52 63
12 Plants 28 57
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 42 59
14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 51
15 Archaea archaebacteria 0 0


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 187 262
2 Genital 92 123
3 Heart 723 935
4 Kidney 149 182
5 Liver 644 839
6 Lung;Gill 59 82
7 Nervous system 606 732
8 Skeletal muscle 1099 1363


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 254 320
2 Endothelial;epithelial;mesothelial cell 258 293
3 Fibroblast 206 270
4 Islet cell;pancreas;thymus 54 66
5 Lymphocyte 58 76
6 Platelet 121 151
7 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 14 16
2 HEK 95 116
3 HeLa 38 55
4 Neuroblastoma 42 49
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 37
7 Other cells and cell lines 292 338


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Intact organism 53 248
2 Intact organ 23 38
3 Intact cells 1161 1310
4 Permeabilized cells 713 751
5 Permeabilized tissue 1110 1204
6 Homogenate 374 418
7 Isolated mitochondria 1258 1565
8 SMP 10 28
9 Chloroplasts 2 10
10 Enzyme 39 102
11 Oxidase and biochemical oxidation 39 49


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase 21 27
2 Complex I 460 606
3 Complex II;succinate dehydrogenase 410 637
4 Complex III 300 362
5 Complex IV;cytochrome c oxidase 405 496
6 Complex V;ATP synthase 219 266
7 Inner mt-membrane transporter 31 44
8 Marker enzyme 58 84
9 Supercomplex 48 77
10 TCA cycle and matrix dehydrogenases 81 108
11 Uncoupling protein 60 66


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP 152 207
2 ATP production 78 123
3 Aerobic glycolysis 49 94
4 Amino acid 9 20
5 Calcium 106 179
6 Coupling efficiency;uncoupling 82 161
7 Cyt c 42 56
8 Fatty acid 127 159
9 Flux control 54 86
10 Inhibitor 131 169
11 Ion;substrate transport 64 115
12 mt-Membrane potential 116 179
13 Oxygen kinetics 106 147
14 Q-junction effect 13 56
15 Redox state 58 98
16 Substrate 181 236
17 Temperature 73 100
18 Threshold;excess capacity 27 30
19 Uncoupler 55 70


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2853 3080
2 R ROUTINE ROUTINE respiration Physiological state, intact cells 892 979
3 E ETS Electron transfer system capacity Maximal noncoupled respiration 0 0
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2598 2755


Pathway control states

# O2k-Publications MitoPedia: Pathway control states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 607 751
2 N N-pathway control state NADH-linked, level 4 2462 2610
3 S S-pathway control state Succinate-linked, level 3 1677 1785
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 156 182
5 DQ Duorquinol-linked, level 2 26 31
6 CIV Complex IV single step Ascorbate & TMPD, level 1 700 728
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1570 1626
8 Other 131 147
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1516 1568


MiPMap combinations - examples

Examples for specific combinations
Browse data


O2k-Manuals and protocols and specific instrumental applications

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