O2k-Publications: Topics
- Mitochondria and cell research
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (363 entries) 363 516 2 Exercise physiology;nutrition;life style 754 1048 3 Comparative MiP;environmental MiP 322 474 4 Pharmacology;toxicology 843 1040 5 mt-Biogenesis;mt-density 248 331 6 Genetic knockout;overexpression 651 720 7 Instruments;methods 273 14517<ul><li>"[MiP area" contains a listed "[" character as part of the property label and has therefore been classified as invalid.</li> <!--br--><li>The part "Instruments;methods" of the query was not understood.Results might not be as expected.</li> <!--br--><li>The part "]]" of the query was not understood.Results might not be as expected.</li></ul>
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 274 416 2 Alzheimer's 71 94 3 Autism 7 11 4 Cancer 356 514 5 Cardiovascular 207 289 6 COPD 10 13 7 Diabetes 347 465 8 Inherited 64 99 9 Infectious 50 69 10 Myopathy 77 89 11 Neurodegenerative 169 235 12 Obesity 253 420 13 Parkinson's 67 104 14 Sepsis 74 85 15 Other 288 360
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 93 156 2 Cryopreservation 41 67 3 Hypoxia 115 226 4 Ischemia-reperfusion 326 433 5 Mitochondrial disease 150 211 6 Oxidative stress;RONS 580 837 7 Permeability transition 71 96 8 Temperature: hypothermia; hyperthermia] 91 112
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 5 7 2 Zebrafish (» Fishes) 15 22 3 Drosophila (» Hexapods) 65 91 4 Caenorhabditis elegans (» Nematodes) 24 33 5 Artemia (» Crustaceans) 12 19 6 Saccharomyces cerevisiae (» Fungi) 61 88 7 Comparative MiP 322 474
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 15 27 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153 5 Hexapods insects, springtails; » Drosophila 34 43 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20 8 Molluscs gastropods, cephalopods, bivalves 25 42 9 Nematodes » Caenorhabditis elegans 5 11 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 52 63 12 Plants 28 57 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 42 59 14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 51 15 Archaea archaebacteria 0 7
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 187 262 2 Genital 92 123 3 Heart 723 935 4 Kidney 149 182 5 Liver 644 839 6 Lung;Gill 59 82 7 Nervous system 606 732 8 Skeletal muscle 1099 1363
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 254 320 2 Endothelial;epithelial;mesothelial cell 258 293 3 Fibroblast 205 269 4 Islet cell;pancreas;thymus 54 66 5 Lymphocyte 58 76 6 Platelet 121 151 7 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 14 16 2 HEK 95 116 3 HeLa 38 55 4 Neuroblastoma 42 49 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 37 7 Other cells and cell lines 292 338
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Intact organism 53 248 2 Intact organ 23 38 3 Intact cells 1160 1309 4 Permeabilized cells 712 750 5 Permeabilized tissue 1110 1204 6 Homogenate 374 418 7 Isolated mitochondria 1258 1565 8 SMP 10 28 9 Chloroplasts 2 10 10 Enzyme 39 102 11 Oxidase and biochemical oxidation 39 49
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase 21 27 2 Complex I 460 606 3 Complex II;succinate dehydrogenase 410 637 4 Complex III 300 362 5 Complex IV;cytochrome c oxidase 405 496 6 Complex V;ATP synthase 219 266 7 Inner mt-membrane transporter 31 44 8 Marker enzyme 58 84 9 Supercomplex 48 77 10 TCA cycle and matrix dehydrogenases 81 108 11 Uncoupling protein 60 66
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP 152 207 2 ATP production 78 123 3 Aerobic glycolysis 49 94 4 Amino acid 9 20 5 Calcium 106 179 6 Coupling efficiency;uncoupling 82 161 7 Cyt c 42 56 8 Fatty acid 127 159 9 Flux control 54 86 10 Inhibitor 131 169 11 Ion;substrate transport 64 115 12 mt-Membrane potential 116 179 13 Oxygen kinetics 106 147 14 Q-junction effect 13 56 15 Redox state 58 98 16 Substrate 181 236 17 Temperature 73 100 18 Threshold;excess capacity 27 30 19 Uncoupler 55 70
Coupling control states
# O2k-Publications MitoPedia: Coupling control states Comment O2k Total 1 P OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2852 3079 2 R ROUTINE respiration Physiological state, intact cells 891 978 3 E Electron transfer system capacity Maximal noncoupled respiration 0 0 4 L LEAK respiration Resting state, non-phosphorylating respiration 2597 2754
Pathway control states
# O2k-Publications MitoPedia: Pathway control states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 607 751 2 N N-pathway control state NADH-linked, level 4 2461 2609 3 S S-pathway control state Succinate-linked, level 3 1676 1784 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 156 182 5 DQ Duorquinol-linked, level 2 26 31 6 CIV Complex IV single step Ascorbate & TMPD, level 1 700 728 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1569 1625 8 Other 131 147 9 ROX Residual oxygen consumption includes non-mitochondrial respiration 1516 1568
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 1099 1363 2 O2k-Publications: Human heart 723 935 3 O2k-Publications: Skeletal muscle - human vs mouse 39 48
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Manual 24 25 2 Instruments;methods 273 416 3 TIP2k 44 44 4 O2k-Fluorometry 348 354 5 O2k-Fluorometry - Fluorophores 22 22 6 TPP + ISE-Module 54 58 7 O2k-pH ISE-Module 4 5 8 Theoretical background 13 69 9 PBI Shredder 20 22
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 29 35