O2k-Publications: Topics

O2k-Publications: Topics

Mitochondria and cell research

Mitochondrial physiology: MiP areas

#	O2k-Publications	O2k	Total
1	mt-Medicine (363 entries)	363	516
2	Exercise physiology;nutrition;life style	754	1048
3	Comparative MiP;environmental MiP	323	475
4	Pharmacology;toxicology	843	1040
5	mt-Biogenesis;mt-density	248	331
6	Genetic knockout;overexpression	651	720
7	Instruments;methods	273	416

Alphabetical order

#	O2k-Publications	O2k	Total
1	Aging;senescence	274	416
2	Alzheimer's	71	94
3	Autism	7	11
4	Cancer	356	514
5	Cardiovascular	207	289
6	COPD	10	13
7	Diabetes	347	465
8	Inherited	64	99
9	Infectious	50	69
10	Myopathy	77	89
11	Neurodegenerative	169	235
12	Obesity	253	420
13	Parkinson's	67	104
14	Sepsis	74	85
15	Other	288	360

Alphabetical order

#	O2k-Publications	Comment	O2k	Total
1	Cell death	White, brown, beige fat tissue	93	156
2	Cryopreservation		41	67
3	Hypoxia		116	227
4	Ischemia-reperfusion		326	433
5	Mitochondrial disease		150	211
6	Oxidative stress;RONS		580	837
7	Permeability transition		71	96
8	Temperature: hypothermia; hyperthermia]		91	112

Mammals

#	O2k-Publications	Comment	O2k	Total
1	Human		1449	2060
2	Pig		89	103
3	Horse		27	34
4	Bovines		24	76
5	Cat		2	4
6	Dog		12	30
7	Rabbit		17	22
8	Mouse		1370	1599
9	Rat		874	1130
10	Guinea pig		22	35
11	Other mammals	including only mammals that are not listed as mammalian species above	53	84

Model organisms

#	O2k-Publications	Comment	O2k	Total
1	Chicken	(» Birds)	5	7
2	Zebrafish	(» Fishes)	15	22
3	Drosophila	(» Hexapods)	65	91
4	Caenorhabditis elegans	(» Nematodes)	24	33
5	Artemia	(» Crustaceans)	12	19
6	Saccharomyces cerevisiae	(» Fungi)	61	88
7	Comparative MiP		323	475

Non-mammals

#	O2k-Publications	Comment	O2k	Total
1	Birds	(» Chicken)	15	27
2	Reptiles	turtles, lizards, snakes, crocodiles, alligators	13	18
3	Amphibians	frogs, toads, salamanders	10	15
4	Fishes	bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish	116	153
5	Hexapods	insects, springtails; » Drosophila	34	43
6	Crustaceans	crabs, shrimp, barnacles, etc.; » Artemia	19	40
7	Annelids	polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches	3	20
8	Molluscs	gastropods, cephalopods, bivalves	25	42
9	Nematodes	» Caenorhabditis elegans	5	11
10	Other invertebrates	urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...	11	21
11	Fungi	yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae	52	63
12	Plants		28	57
13	Protists	amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.	42	59
14	Eubacteria	true bacteria, cyanobacteria, spirochetes	25	51
15	Archaea	archaebacteria	0	7

Tissues - alphabetical order

#	O2k-Publications	Comment	O2k	Total
1	Fat	White, brown, beige fat tissue	187	262
2	Genital		92	123
3	Heart		723	935
4	Kidney		149	182
5	Liver		644	839
6	Lung;Gill		59	82
7	Nervous system		606	732
8	Skeletal muscle		1099	1363

Cell types - alphabetical order

#	O2k-Publications	O2k	Total
1	Blood cells	254	320
2	Endothelial;epithelial;mesothelial cell	258	293
3	Fibroblast	206	270
4	Islet cell;pancreas;thymus	54	66
5	Lymphocyte	58	76
6	Platelet	121	151
7	Stem cells	36	48

Cell lines - alphabetical order

#	O2k-Publications	O2k	Total
1	CHO	14	16
2	HEK	95	116
3	HeLa	38	55
4	Neuroblastoma	42	49
5	HUVEC	19	22
6	Macrophage-derived cell lines	26	37
7	Other cells and cell lines	292	338

#	O2k-Publications	Comment	O2k	Total
1	Intact organism		53	248
2	Intact organ		23	38
3	Intact cells		1161	1310
4	Permeabilized cells		713	751
5	Permeabilized tissue		1110	1204
6	Homogenate		374	418
7	Isolated mitochondria		1258	1565
8	SMP	Submitochondrial particles	10	28
9	Chloroplasts		2	10
10	Enzyme		39	102
11	Oxidase and biochemical oxidation		39	49

Alphabetical order

#	O2k-Publications	Comment	O2k	Total
1	Adenine nucleotide translocase	ANT	21	27
2	Complex I	CI	460	606
3	Complex II;succinate dehydrogenase	CII	410	637
4	Complex III	CIII	300	362
5	Complex IV;cytochrome c oxidase	CIV	405	496
6	Complex V;ATP synthase	CV	219	266
7	Inner mt-membrane transporter		31	44
8	Marker enzyme		58	84
9	Supercomplex		48	77
10	TCA cycle and matrix dehydrogenases	Tricarboxylic acid cycle	81	108
11	Uncoupling protein		60	66

Alphabetical order

#	O2k-Publications	Comment	O2k	Total
1	ADP	ADP kinetics	152	207
2	ATP production		78	123
3	Aerobic glycolysis		49	94
4	Amino acid		9	20
5	Calcium		106	179
6	Coupling efficiency;uncoupling		82	161
7	Cyt c	Cytochrome c	42	56
8	Fatty acid	FA substrate kinetics	127	159
9	Flux control		54	86
10	Inhibitor	Inhibitor kinetics	131	169
11	Ion;substrate transport		64	115
12	mt-Membrane potential		116	179
13	Oxygen kinetics		106	147
14	Q-junction effect		13	56
15	Redox state		58	98
16	Substrate	Fuel substrate kinetics	181	236
17	Temperature	Temperature dependence	73	100
18	Threshold;excess capacity		27	30
19	Uncoupler	Uncoupler kinetics	55	70

#	O2k-Publications	MitoPedia: Coupling control states	Comment	O2k	Total
1	P	OXPHOS capacity	Oxidative phosphorylation capacity, saturating [ADP]	2853	3080
2	R	ROUTINE respiration	Physiological state, intact cells	892	979
3	E	Electron transfer system capacity	Maximal noncoupled respiration	0	0
4	L	LEAK respiration	Resting state, non-phosphorylating respiration	2598	2755

#	O2k-Publications	MitoPedia: Pathway control states	Comment	O2k	Total
1	F	F-pathway control state	Fatty acid oxidation, level 5	607	751
2	N	N-pathway control state	NADH-linked, level 4	2462	2610
3	S	S-pathway control state	Succinate-linked, level 3	1677	1785
4	Gp	Gp-pathway control state	Glycerophosphate-linked, level 3	156	182
5	DQ		Duorquinol-linked, level 2	26	31
6	CIV	Complex IV single step	Ascorbate & TMPD, level 1	700	728
7	NS	NS-pathway control state	Convergent CI- and CII-linked electron flow to the Q-junction	1570	1626
8	Other			131	147
9	ROX	Residual oxygen consumption	includes non-mitochondrial respiration	1516	1568

Examples for specific combinations

#	O2k-Publications	O2k	Total
1	O2k-Publications: Human skeletal muscle	1099	1363
2	O2k-Publications: Human heart	723	935
3	O2k-Publications: Skeletal muscle - human vs mouse	39	48

Browse data

#	O2k-Publications	Comment	O2k	Total
1	Oxygraph-2k		4691	4691
2	TIP2k		44	44
3	O2k-Fluorometry		348	354
4	O2k-pH ISE-Module		4	5
5	Nitric Oxide		8	8
6	TPP + ISE-Module		54	58
7	Calcium		11	11
8	O2k- Spectrophotometer		8	8
9	O2k-Manual		24	25
8	O2k-Protocol		71	93
9	Theoretical background		13	69
10	Instruments;methods		273	416
11	O2k-Fluorometry - Fluorophores		22	22
12	PBI Shredder	Homogenate preparation	20	22

#	O2k-Publications	MitoPedia:	Comment	O2k	Total
1	Twin-Flow respirometry			0	21
2	Separate DatLab applications			29	35