O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and cell research
O2k-Publications: chronological
Publications in the MiPMap


See also » O2k-Publications - chronological: 3385


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (326 entries) 326 446
2 Exercise physiology;nutrition;life style 560 742
3 Comparative MiP;environmental MiP 275 401
4 Pharmacology;toxicology 533 623
5 mt-Biogenesis;mt-density 226 292
6 Genetic knockout;overexpression 438 493
7 Instruments;methods 198 296


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 212 317
2 Alzheimer's 55 74
3 Autism 2 3
4 Cancer 263 351
5 Cardiovascular 131 170
6 COPD 8 10
7 Diabetes 258 334
8 Inherited 51 71
9 Infectious 25 30
10 Myopathy 49 58
11 Neurodegenerative 134 181
12 Obesity 168 227
13 Parkinson's 51 77
14 Sepsis 55 64
15 Other 184 245


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 74 131
2 Cryopreservation 32 55
3 Hypoxia 63 91
4 Ischemia-reperfusion 273 373
5 Oxidative stress;RONS 478 675
6 Permeability transition 52 71
7 Temperature: hypothermia; hyperthermia 81 97


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1049 1432
2 Pig 74 86
3 Horse 22 28
4 Bovines 20 62
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 20
8 Mouse 936 1125
9 Rat 699 909
10 Guinea pig 17 30
11 Other mammals including only mammals that are not listed as mammalian species above 43 71
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 3 4
2 Zebrafish Fishes) 7 12
3 Drosophila Hexapods) 46 59
4 Caenorhabditis elegans Nematodes) 12 19
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 52 70
7 Comparative MiP 275 401


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 10 20
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 92 122
5 Hexapods insects, springtails; » Drosophila 26 34
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 18 35
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 16 26
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 10 14
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 49 60
12 Plants 26 45
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38
14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 128 157
2 Genital 70 95
3 Heart 547 713
4 Kidney 108 135
5 Liver 497 648
6 Lung;Gill 40 53
7 Nervous system 471 563
8 Skeletal muscle 822 1014


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 181 226
2 Endothelial;epithelial;mesothelial cell 185 214
3 Fibroblast 157 203
4 Islet cell;pancreas;thymus 39 49
5 Lymphocyte 48 61
6 Platelet 84 98
7 Stem cells 23 34


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 64 82
3 HeLa 25 38
4 Neuroblastoma 26 27
5 HUVEC 19 22
6 Macrophage-derived cell lines 21 30
7 Other cells and cell lines 251 291


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Intact organism 38 107
2 Intact organ 20 31
3 Intact cells 807 902
4 Permeabilized cells 468 495
5 Permeabilized tissue 826 902
6 Homogenate 251 283
7 Isolated mitochondria 964 1223
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 38 67
11 Oxidase and biochemical oxidation 36 46


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 23
2 Complex I CI 393 475
3 Complex II;succinate dehydrogenase CII 349 417
4 Complex III CIII 264 308
5 Complex IV;cytochrome c oxidase CIV 364 429
6 Complex V;ATP synthase CV 190 228
7 Inner mt-membrane transporter 29 41
8 Marker enzyme 48 69
9 Supercomplex 36 47
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 66 84
11 Uncoupling protein 51 56


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 143 184
2 ATP production 60 92
3 Aerobic glycolysis 39 74
4 Amino acid 7 16
5 Calcium 65 97
6 Coupling efficiency;uncoupling 69 127
7 Cyt c Cytochrome c 37 45
8 Fatty acid FA substrate kinetics 108 129
9 Flux control 44 69
10 Inhibitor Inhibitor kinetics 126 154
11 Ion;substrate transport 47 86
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


84 132
13 Oxygen kinetics 88 118
14 Q-junction effect 5 6
15 Redox state 44 68
16 Substrate Fuel substrate kinetics 170 221
17 Temperature Temperature dependence 54 77
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 67


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2045 2228
2 R ROUTINE ROUTINE respiration Physiological state, intact cells 619 676
3 E ET ET-capacity Maximal noncoupled respiration 1390 1471
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1671 1791


Pathway control states

# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 421 514
2 N N-pathway control state NADH-linked, level 4 1674 1778
3 S S-pathway control state Succinate-linked, level 3 1132 1201
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 102 118
5 DQ Duorquinol-linked, level 2 14 17
6 CIV Complex IV single step Ascorbate & TMPD, level 1 479 503
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1032 1073
8 Other 121 136
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 932 972


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 822 1014
2 O2k-Publications: Human heart 547 713
3 O2k-Publications: Skeletal muscle - human vs mouse 33 41
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3385 3385
2 TIP2k 41 41
3 O2k-Fluorometry 197 202
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 11 11
6 TPP+ ISE-Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


47 51
7 Calcium 8 8
8 O2k- Spectrophotometer 9 9
9 O2k-Manual 23 24
8 O2k-Protocol 68 85
9 Theoretical background 12 65
10 Instruments;methods 198 296
11 O2k-Fluorometry - Fluorophores 29 29
12 PBI Shredder Homogenate preparation 21 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 22 29