O2k-Publications: Topics

O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem

» O2k-Publications alert - » Recent O2k-Publications

» O2k-Publications - chronological: 4690

Mitochondrial physiology: MiP areas

#	O2k-Publications	O2k	Total
1	mt-Medicine (363 entries)	363	516
2	Exercise physiology;nutrition;life style	754	1048
3	Comparative MiP;environmental MiP	322	474
4	Pharmacology;toxicology	843	1040
5	mt-Biogenesis;mt-density	248	331
6	Genetic knockout;overexpression	651	720
7	Instruments;methods	273	416

Pathological states

Alphabetical order

#	O2k-Publications	O2k	Total
1	Aging;senescence	274	416
2	Alzheimer's	71	94
3	Autism	7	11
4	Cancer	356	514
5	Cardiovascular	207	289
6	COPD	10	13
7	Diabetes	347	465
8	Inherited	64	99
9	Infectious	50	69
10	Myopathy	77	89
11	Neurodegenerative	169	235
12	Obesity	253	420
13	Parkinson's	67	104
14	Sepsis	74	85
15	Other	288	360

Stress conditions

Alphabetical order

#	O2k-Publications	Comment	O2k	Total
1	Cell death	White, brown, beige fat tissue	93	156
2	Cryopreservation		41	67
3	Hypoxia		115	226
4	Ischemia-reperfusion		326	433
5	Oxidative stress;RONS		580	837
6	Permeability transition		71	96
7	Temperature: hypothermia; hyperthermia		91	112

Organisms

Mammals

#	O2k-Publications	Comment	O2k	Total
1	Human		1449	2061
2	Pig		89	103
3	Horse		27	34
4	Bovines		24	76
5	Cat		2	4
6	Dog		12	30
7	Rabbit		17	22
8	Mouse		1370	1599
9	Rat		874	1130
10	Guinea pig		22	35
11	Other mammals	including only mammals that are not listed as mammalian species above	52	83

Model organisms

#	O2k-Publications	Comment	O2k	Total
1	Chicken	(» Birds)	5	7
2	Zebrafish	(» Fishes)	15	22
3	Drosophila	(» Hexapods)	65	91
4	Caenorhabditis elegans	(» Nematodes)	24	33
5	Artemia	(» Crustaceans)	12	19
6	Saccharomyces cerevisiae	(» Fungi)	61	88
7	Comparative MiP		322	474

Non-mammals

#	O2k-Publications	Comment	O2k	Total
1	Birds	(» Chicken)	15	27
2	Reptiles	turtles, lizards, snakes, crocodiles, alligators	13	18
3	Amphibians	frogs, toads, salamanders	10	15
4	Fishes	bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish	116	153
5	Hexapods	insects, springtails; » Drosophila	34	43
6	Crustaceans	crabs, shrimp, barnacles, etc.; » Artemia	19	40
7	Annelids	polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches	3	20
8	Molluscs	gastropods, cephalopods, bivalves	25	42
9	Nematodes	» Caenorhabditis elegans	5	11
10	Other invertebrates	urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...	11	21
11	Fungi	yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae	52	63
12	Plants		28	57
13	Protists	amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.	42	59
14	Eubacteria	true bacteria, cyanobacteria, spirochetes	25	51
15	Archaea	archaebacteria	0	7

Tissues and cells

Tissues - alphabetical order

#	O2k-Publications	Comment	O2k	Total
1	Fat	White, brown, beige fat tissue	187	262
2	Genital		92	123
3	Heart		723	935
4	Kidney		149	182
5	Liver		644	839
6	Lung;Gill		59	82
7	Nervous system		606	732
8	Skeletal muscle		1099	1363

Cell types - alphabetical order

#	O2k-Publications	O2k	Total
1	Blood cells	254	320
2	Endothelial;epithelial;mesothelial cell	258	293
3	Fibroblast	205	269
4	Islet cell;pancreas;thymus	54	66
5	Leukemia	22	25
6	Lymphocyte	58	76
7	Platelet	121	151
8	Stem cells	36	48

Cell lines - alphabetical order

#	O2k-Publications	O2k	Total
1	CHO	14	16
2	HEK	95	116
3	HeLa	38	55
4	Neuroblastoma	42	49
5	HUVEC	19	22
6	Macrophage-derived cell lines	26	37
7	Other cells and cell lines	292	338

Preparations

#	O2k-Publications	Comment	O2k	Total
1	Living organism		53	248
2	Intact organ		23	38
3	Living cells		1160	1309
4	Permeabilized cells		712	750
5	Permeabilized tissue		1110	1204
6	Homogenate		374	418
7	Isolated mitochondria		1258	1565
8	SMP	Submitochondrial particles	10	28
9	Chloroplasts		2	10
10	Enzyme		39	102
11	Oxidase and biochemical oxidation		39	49

Enzymes

Alphabetical order

#	O2k-Publications	Comment	O2k	Total
1	Adenine nucleotide translocase	ANT	21	27
2	Complex I	CI	460	606
3	Complex II;succinate dehydrogenase	CII	410	637
4	Complex III	CIII	300	362
5	Complex IV;cytochrome c oxidase	CIV	405	496
6	Complex V;ATP synthase	CV	219	266
7	mt-Inner membrane transporter		31	44
8	Marker enzyme		58	84
9	Supercomplex		48	77
10	TCA cycle and matrix dehydrogenases	Tricarboxylic acid cycle	81	108
11	Uncoupling protein		60	66

Regulation

Alphabetical order

#	O2k-Publications	MitoPedia:	Comment	O2k	Total
1	ADP		ADP kinetics	152	207
2	ATP production			78	123
3	Aerobic glycolysis			49	94
4	Amino acid			9	20
5	Calcium			106	179
6	Coupling efficiency;uncoupling			82	161
7	Cyt c		Cytochrome c	42	56
8	Fatty acid		FA substrate kinetics	127	159
9	Flux control			54	86
10	Inhibitor		Inhibitor kinetics	131	169
11	Ion;substrate transport			64	115
12	mt-Membrane potential	Mitochondrial membrane potential	Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>> Fundamental relationships » Force » Affinity » Flux » Advancement » Advancement per volume » Stoichiometric number mt-Membrane potential and protonmotive force » Protonmotive force » Mitochondrial membrane potential » Chemical potential » Faraday constant » Format » Uncoupler O2k-Potentiometry » O2k-Catalogue: O2k-TPP+ ISE-Module » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE » TPP - O2k-Procedures: Tetraphenylphosphonium » Specifications: MiPNet15.08 TPP electrode » Poster » Unspecific binding of TPP+ » TPP+ inhibitory effect O2k-Fluorometry » O2k-Catalogue: O2k-FluoRespirometer » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin » TMRM - O2k-Procedures: TMRM O2k-Publications » O2k-Publications: mt-Membrane potential » O2k-Publications: Coupling efficiency;uncoupling	116	179
13	Oxygen kinetics			106	147
14	Q-junction effect			13	56
15	Redox state			58	98
16	Substrate		Fuel substrate kinetics	181	236
17	Temperature		Temperature dependence	73	100
18	Threshold;excess capacity			27	30
19	Uncoupler		Uncoupler kinetics	55	70

Coupling control states

#	O2k-Publications	MitoPedia: Coupling control states	Comment	O2k	Total
1	P	OXPHOS capacity	Oxidative phosphorylation capacity, saturating [ADP]	2852	3079
2	R	ROUTINE respiration	Physiological state, living cells	891	978
3	E	ET-capacity	Maximal noncoupled respiration	2056	2165
4	L	LEAK respiration	Resting state, non-phosphorylating respiration	2597	2754

Pathway control states

#	O2k-Publications	MitoPedia: Electron transfer-pathway states	Comment	O2k	Total
1	F	F-pathway control state	Fatty acid oxidation, level 5	607	751
2	N	N-pathway control state	NADH-linked, level 4	2461	2609
3	S	S-pathway control state	Succinate-linked, level 3	1676	1784
4	Gp	Gp-pathway control state	Glycerophosphate-linked, level 3	156	182
5	DQ		Duorquinol-linked, level 2	26	31
6	CIV	Complex IV single step	Ascorbate & TMPD, level 1	700	728
7	NS	NS-pathway control state	Convergent CI- and CII-linked electron flow to the Q-junction	1569	1625
8	Other			131	147
9	ROX	Residual oxygen consumption	includes non-mitochondrial respiration	1516	1568

MiPMap combinations - examples

Examples for specific combinations

#	O2k-Publications	O2k	Total
1	O2k-Publications: Human skeletal muscle	1099	1363
2	O2k-Publications: Human heart	723	935
3	O2k-Publications: Skeletal muscle - human vs mouse	39	48

Browse data

Browse O2k-Publications

O2k-Manuals and protocols and specific instrumental applications

#	O2k-Publications	MitoPedia:	Comment	O2k	Total
1	Oxygraph-2k			4690	4690
2	TIP2k			44	44
3	O2k-Fluorometry			348	354
4	O2k-pH ISE-Module	pH	Bioblast links: pH and protons - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>> pH and protons » pH » hydrogen ion H⁺ » hydron H⁺ » hydronium ion H₃O⁺ » hydride H^- » proton p⁺ » pH buffering capacity » proton flux » proton pump versus hydrogen ion pump » proton leak » proton slip » protonmotive force O2k-pH » O2k-Catalogue: O2k-pH ISE-Module » O2k-Manual pH electrode: MiPNet23.15 O2k-pH ISE-Module » O2k-SOP: MiPNet08.16 pH calibration » File:PH-Calibration-List.xls » NextGen-O2k, ratiometric: Carboxy SNARF 1 » NextGen-O2k, ratiometric: HPTS » pH calibration buffers O2k-Publications » O2k-Publications: O2k-pH ISE-Module HRFR - general » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual » O2k signals and output » O2k-SOP: MiPNet14.06 Instrumental O2 background » MiPNet19.18A O2k-Series G: Start » ESD » O2k configuration » O2k control » O2k-FluoRespirometer » O2k-Main Unit#O2k-Series » Titration-Injection microPump » Compare: O2k-TPP+_ISE-Module DatLab » DatLab 7 » MiPNet26.06 DatLab 7: Guide » DatLab 6 » MiPNet19.18C DatLab 6: Guide » MiPNet19.18D O2k-Series G and DatLab 6: Calibration » Reference layouts for DatLab graphs	4	5
5	Nitric Oxide			8	8
6	TPP⁺ ISE-Module	Tetraphenylphosphonium	Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>> Fundamental relationships » Force » Affinity » Flux » Advancement » Advancement per volume » Stoichiometric number mt-Membrane potential and protonmotive force » Protonmotive force » Mitochondrial membrane potential » Chemical potential » Faraday constant » Format » Uncoupler O2k-Potentiometry » O2k-Catalogue: O2k-TPP+ ISE-Module » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE » TPP - O2k-Procedures: Tetraphenylphosphonium » Specifications: MiPNet15.08 TPP electrode » Poster » Unspecific binding of TPP+ » TPP+ inhibitory effect O2k-Fluorometry » O2k-Catalogue: O2k-FluoRespirometer » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin » TMRM - O2k-Procedures: TMRM O2k-Publications » O2k-Publications: mt-Membrane potential » O2k-Publications: Coupling efficiency;uncoupling	54	58
7	Calcium			11	11
8	O2k- Spectrophotometer			8	8
9	O2k-Manual			24	25
8	O2k-Protocol			71	93
9	Theoretical background			13	69
10	Instruments;methods			273	416
11	O2k-Fluorometry - Fluorophores			22	22
12	PBI Shredder		Homogenate preparation	20	22

O2k-Procedures

#	O2k-Publications	MitoPedia:	Comment	O2k	Total
1	Twin-Flow respirometry			0	21
2	Separate DatLab applications			29	35