O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research
O2k-Publications: chronological
Publications in the MiPMap


» Recent O2k-Publications
» O2k-Publications - chronological: 3362


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (326 entries) 326 446
2 Exercise physiology;nutrition;life style 555 734
3 Comparative MiP;environmental MiP 272 398
4 Pharmacology;toxicology 528 615
5 mt-Biogenesis;mt-density 226 292
6 Genetic knockout;overexpression 434 488
7 Instruments;methods 198 293


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 209 313
2 Alzheimer's 54 72
3 Autism 2 3
4 Cancer 261 348
5 Cardiovascular 129 168
6 COPD 8 10
7 Diabetes 257 332
8 Inherited 51 71
9 Infectious 25 30
10 Myopathy 48 57
11 Neurodegenerative 134 180
12 Obesity 167 225
13 Parkinson's 51 76
14 Sepsis 55 64
15 Other 181 241


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 73 129
2 Cryopreservation 32 55
3 Hypoxia 62 90
4 Ischemia-reperfusion 272 372
5 Oxidative stress;RONS 476 672
6 Permeability transition 52 71
7 Temperature: hypothermia; hyperthermia 81 97


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1040 1422
2 Pig 74 86
3 Horse 21 27
4 Bovines 20 62
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 20
8 Mouse 930 1114
9 Rat 698 908
10 Guinea pig 17 30
11 Other mammals including only mammals that are not listed as mammalian species above 43 71
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 3 4
2 Zebrafish Fishes) 7 12
3 Drosophila Hexapods) 44 57
4 Caenorhabditis elegans Nematodes) 11 18
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 52 70
7 Comparative MiP 272 398


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 10 20
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 92 122
5 Hexapods insects, springtails; » Drosophila 26 34
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 17 34
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 16 26
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 10 14
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 26 45
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38
14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 128 157
2 Genital 70 94
3 Heart 544 710
4 Kidney 108 135
5 Liver 496 646
6 Lung;Gill 40 53
7 Nervous system 470 562
8 Skeletal muscle 814 1005


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 180 225
2 Endothelial;epithelial;mesothelial cell 184 211
3 Fibroblast 157 203
4 Islet cell;pancreas;thymus 39 49
5 Lymphocyte 48 60
6 Platelet 83 97
7 Stem cells 23 34


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 63 81
3 HeLa 24 37
4 Neuroblastoma 26 27
5 HUVEC 19 22
6 Macrophage-derived cell lines 21 30
7 Other cells and cell lines 250 290


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 38 107
2 Intact organ 20 31
3 Living cells 804 899
4 Permeabilized cells 464 491
5 Permeabilized tissue 821 897
6 Homogenate 251 283
7 Isolated mitochondria 958 1216
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 38 67
11 Oxidase and biochemical oxidation 36 46


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 23
2 Complex I CI 391 472
3 Complex II;succinate dehydrogenase CII 347 415
4 Complex III CIII 263 307
5 Complex IV;cytochrome c oxidase CIV 363 428
6 Complex V;ATP synthase CV 189 227
7 mt-Inner membrane transporter 28 38
8 Marker enzyme 48 69
9 Supercomplex 36 47
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 66 83
11 Uncoupling protein 51 56


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 143 184
2 ATP production 59 91
3 Aerobic glycolysis 39 74
4 Amino acid 7 16
5 Calcium 65 97
6 Coupling efficiency;uncoupling 69 127
7 Cyt c Cytochrome c 37 45
8 Fatty acid FA substrate kinetics 108 129
9 Flux control 44 69
10 Inhibitor Inhibitor kinetics 126 154
11 Ion;substrate transport 46 83
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


82 130
13 Oxygen kinetics 88 118
14 Q-junction effect 5 6
15 Redox state 44 68
16 Substrate Fuel substrate kinetics 170 221
17 Temperature Temperature dependence 53 76
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 67


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2030 2212
2 R ROUTINE ROUTINE respiration Physiological state, living cells 616 673
3 E ET ET-capacity Maximal noncoupled respiration 1375 1455
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1655 1774


Pathway control states

# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 420 513
2 N N-pathway control state NADH-linked, level 4 1658 1761
3 S S-pathway control state Succinate-linked, level 3 1122 1190
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 102 118
5 DQ Duorquinol-linked, level 2 14 17
6 CIV Complex IV single step Ascorbate & TMPD, level 1 473 497
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1020 1061
8 Other 121 135
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 920 959


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 814 1005
2 O2k-Publications: Human heart 544 710
3 O2k-Publications: Skeletal muscle - human vs mouse 33 41
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3362 3362
2 TIP2k 41 41
3 O2k-Fluorometry 196 201
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 11 11
6 TPP+ ISE-Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


47 51
7 Calcium 8 8
8 O2k- Spectrophotometer 9 9
9 O2k-Manual 23 24
8 O2k-Protocol 68 85
9 Theoretical background 12 65
10 Instruments;methods 198 293
11 O2k-Fluorometry - Fluorophores 119 119
12 PBI Shredder Homogenate preparation 21 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 22 29