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Difference between revisions of "SUIT-003 O2 ce-pce D020"

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{{MitoPedia
{{MitoPedia
|abbr=ceP,S
|abbr=CCVP
|description=[[File:ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig;1c;2Ama;3AsTm;4Azd.png|400px]]
|description=[[File:ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig;1c;2Ama;3AsTm;4Azd.png|600px]]
|info='''A''' Coupling control protocol and respirometric cell viability test '''(CCV protocol)'''; ce: non-permeabilized cells, pce: permeabilized cells - '''[[SUIT-003]]'''
|info='''A''' '''[[SUIT-003]]''' - [[Coupling-control protocol]] and respirometric cell viability test; ce: living cells, pce: permeabilized cells  
|application=O2
|application=O2
|SUIT number=D020_ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig;1c;2Ama;3AsTm;4Azd
|SUIT number=D020_ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig;1c;2Ama;3AsTm;4Azd
}}
}}
::: '''[[MitoPedia: SUIT]]'''
::: '''[[Categories of SUIT protocols |SUIT-category]]:''' ceP,S
::: '''[[SUIT protocol pattern]]:''' complex cell [[coupling control protocol]] ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig;1c;2Ama;3AsTm;4Azd


SUIT-003 O2 ce-pce D020 has been designed to study the [[coupling control state]] and membrane permeability of intact cells. The different capacities are tested in the sequence [[ROUTINE]], [[LEAK]] and [[ET]]. Also, in order to study the [[LEAK-respiration]], we need to inhibit the [[phosphorylation system]] which in our protocol is achieved using [[oligomycin]]. However, the final concentration of [[oligomycin]] has to be carefully adjusted in preliminary experiments for different samples and, the inhibitory effect on the [[Electron transfer-pathway|electron transfer system]], has to be studied to avoid an underestimation of the [[ET-capacity]]. SUIT-003 O2 ce-pce D020 follows a modular approach and can be easily used in combination with the assessment of complex IV capacity.
{{Template:SUIT text D020}}


__TOC__
Communicated by [[Iglesias-Gonzalez J]], [[Doerrier C]], [[Cardoso LH]], [[Gnaiger E]] (last update 2019-09-24)
== Representative traces ==
[[File:D020 O2 traces.png|600px]]


__TOC__
Communicated by [[Iglesias-Gonzalez J]], [[Krumschnabel G]], [[Doerrier C]] and [[Cardoso LH]] (last update 2019-03-28)


{{Template:SUIT-003 O2 ce-pce D020}}
{{Template:SUIT-003 O2 ce-pce D020}}


== Strengths and limitations ==
== Strengths and limitations ==
:::* The SUIT-003 O2 ce-pce D020 is a cell coupling control protocol. The total cell count (''N''<sub>ce</sub>) is the sum of viable cells (''N''<sub>vce</sub>) and dead cells (''N''<sub>dce</sub>).
:::* The SUIT-003 O2 ce-pce D020 is a coupling-control protocol for living cells. The total cell count (''N''<sub>ce</sub>) is the sum of viable cells (''N''<sub>vce</sub>) and dead cells (''N''<sub>dce</sub>).
:::* For determination of respirometric viability index, it is assumed that both viable and dead cells contain functional mitochondria.
:::* For determination of respirometric viability index, it is assumed that both viable and dead cells contain functional mitochondria.
:::* When the cell viability test module is not incorporated into the experiment, [[complex III]] inhibitors can be used to reach [[Residual oxygen consumption| Rox]] instead of [[rotenone]].
:::* When the cell viability test module is not incorporated into the experiment, [[Complex III]] inhibitors can be used instead of [[rotenone]] to reach [[Residual oxygen consumption| Rox]].
:::+ Respirometric cell viability test correlates with other cell viability quantification methods.
:::+ Respirometric cell viability test correlates with other cell viability quantification methods.
:::+ With the extended module, S-ET capacity can be assessed after the performance of the [[coupling control protocol]], as well as outer mt-membrane integrity with the addition of [[cytochrome c]].
:::+ With the extended module, S-ET capacity can be assessed after the performance of the [[coupling-control protocol]], as well as outer mt-membrane integrity with the addition of [[cytochrome c]].
:::+ [[CIV]] activity can also be measured after the cell viability test module.
:::+ [[CIV]] activity can also be measured after the cell viability test module.
:::+ Flexibility of experiment duration: from 1 hour (cell [[coupling control protocol]]) to 2 and a half hours (cell coupling control, cell viability test module and CIV module).
:::+ Flexibility of experiment duration: from 1 hour (cell [[coupling-control protocol]]) to 2 and a half hours (cell coupling control, cell viability test module and CIV module).
:::- Cells with a cell membrane [[succinate]] transporter are not suitable for the viability test.
:::- Cells with a cell membrane [[succinate]] transporter are not suitable for the viability test.
:::- Pathological profiles could hinder the cell viability test.
:::- Pathological profiles could hinder the cell viability test.
:::- Careful washing is required after the experiment to avoid carry-over of inhibitors and uncoupler.
:::- Careful washing is required after the experiment to avoid carry-over of inhibitors and uncoupler.
:::- The concentration of [[oligomycin]] has to be carefully tested to avoid inhibitory effects in the evaluation of the [[ET-capacity]].
:::- The concentration of [[oligomycin]] has to be carefully tested to avoid inhibitory effects in the evaluation of the [[ET capacity]].


== Compare SUIT protocols ==
== Compare SUIT protocols ==
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::::* [[SUIT-003 O2 ce-pce D013]]
::::* [[SUIT-003 O2 ce-pce D013]]
::::* [[SUIT-003 O2 ce-pce D018]]
::::* [[SUIT-003 O2 ce-pce D018]]
== Chemicals and syringes ==
{{Template:Chemicals SUIT-003 D020}}
{{Template:Chemicals CIV}}
::: Suggested stock concentrations are shown in the specific DL-Protocol.


== References ==
== References ==
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|order=descending
|order=descending
}}
}}
 
::::* Stadlmann S, Renner K, Pollheimer J, Moser PL, Zeimet AG, Offner FA, Gnaiger E (2006) Preserved coupling of oxidative phosphorylation but decreased mitochondrial respiratory capacity in IL-1ß treated human peritoneal mesothelial cells. Cell Biochem Biophys 44:179-86. - [[Stadlmann 2006 Cell Biochem Biophys |»Bioblast link«]]


{{MitoPedia concepts
{{MitoPedia concepts

Revision as of 11:45, 11 September 2020


high-resolution terminology - matching measurements at high-resolution


SUIT-003 O2 ce-pce D020

Description

Ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig;1c;2Ama;3AsTm;4Azd.png

Abbreviation: CCVP

Reference: A SUIT-003 - Coupling-control protocol and respirometric cell viability test; ce: living cells, pce: permeabilized cells

SUIT number: D020_ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig;1c;2Ama;3AsTm;4Azd

O2k-Application: O2


SUIT-003 O2 ce-pce D020 is designed to study coupling control and plasma membrane permeability of living cells. Respiratory capacities are tested in a sequence of coupling states: ROUTINE, LEAK respiration and Electron transfer pathway. To study LEAK respiration, the phosphorylation system is inhibited by oligomycin. The final concentration of oligomycin has to be carefully optimized for various cell types, to minimize the inhibitory effect on the electron transfer system which would lead to an underestimation of ET capacity. The viability index, VI, in the simple CCVP-ce (SUIT-003 O2 ce-pce D020) may be underestimated, if succinate uptake in the living cells proceeds throught the dicarboxylate carrier of the plasma membrane. CCVP-ce can be extended by the Complex IV module.

Communicated by Iglesias-Gonzalez J, Doerrier C, Cardoso LH, Gnaiger E (last update 2019-09-24)

Representative traces

D020 O2 traces.png


MitoPedia: SUIT

Steps and respiratory states

Ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig;1c;2Ama;3AsTm;4Azd.png

Step State Pathway Q-junction Comment - Events (E) and Marks (M)
ce1 ROUTINE ce1
  • ROUTINE respiration in the physiological coupling state R. Externally added permeable substrates could contribute to this respiratory state.
ce1P ROUTINE ce1;ce1P
  • ROUTINE respiration in the physiological coupling state R. Externally added permeable substrates could contribute to this respiratory state.
ce2Omy L(Omy) ce1;ce1P;ce2Omy
  • Non-phosphorylating resting state (LEAK state); LEAK-respiration, L(Omy), after blocking the ATP synthase with oligomycin.
ce3U E ce1;ce1P;ce2Omy;ce3U
ce4Rot ROX ce1;ce1P;ce2Omy;ce3U;ce4Rot
  • Rox is the residual oxygen consumption in the ROX state, due to oxidative side reactions, estimated either after inhibition of CIII (e.g. antimycin A, myxothiazol), CIV (e.g. Cyanide) or in the absence of endogenous fuel-substrates. Rox is subtracted from oxygen flux as a baseline for all respiratory states, to obtain mitochondrial respiration.
Step State Pathway Q-junction Comment - Events (E) and Marks (M)
ce5S ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S
1Dig* SE S CII ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig
1c SE S CII ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig;1c
  • Addition of cytochrome c yields a test for integrity of the mtOM (cytochrome c control efficiency). Stimulation by added cytochrome c would indicate an injury of the mtOM and limitation of respiration in the preceding state without added c due to loss of cytochrome c. Typically, cytochrome c is added immediately after the earliest ADP-activation step (OXPHOS capacity P with saturating [ADP]).
  • Noncoupled electron transfer state, ET state, with ET capacity E.
2Ama ROX ce1;ce1P;ce2Omy;ce3U;ce4Rot;ce5S;1Dig;1c;2Ama
  • Rox is the residual oxygen consumption in the ROX state, due to oxidative side reactions, estimated after addition of antimycin A (inhibitor of CIII). Rox is subtracted from oxygen flux as a baseline for all respiratory states, to obtain mitochondrial respiration (mt).


Step Respiratory state Pathway control ET-Complex Comment
## AsTm AsTmE CIV CIV
## Azd CHB


Questions.jpg


Click to expand or collaps

Strengths and limitations

  • The SUIT-003 O2 ce-pce D020 is a coupling-control protocol for living cells. The total cell count (Nce) is the sum of viable cells (Nvce) and dead cells (Ndce).
  • For determination of respirometric viability index, it is assumed that both viable and dead cells contain functional mitochondria.
  • When the cell viability test module is not incorporated into the experiment, Complex III inhibitors can be used instead of rotenone to reach Rox.
+ Respirometric cell viability test correlates with other cell viability quantification methods.
+ With the extended module, S-ET capacity can be assessed after the performance of the coupling-control protocol, as well as outer mt-membrane integrity with the addition of cytochrome c.
+ CIV activity can also be measured after the cell viability test module.
+ Flexibility of experiment duration: from 1 hour (cell coupling-control protocol) to 2 and a half hours (cell coupling control, cell viability test module and CIV module).
- Cells with a cell membrane succinate transporter are not suitable for the viability test.
- Pathological profiles could hinder the cell viability test.
- Careful washing is required after the experiment to avoid carry-over of inhibitors and uncoupler.
- The concentration of oligomycin has to be carefully tested to avoid inhibitory effects in the evaluation of the ET capacity.

Compare SUIT protocols

Chemicals and syringes

Step Chemical(s) and link(s) Comments
ce1P Pyruvate (P)
ce2Omy Oligomycin (Omy)
ce3U Carbonyl cyanide m-chlorophenyl hydrazone, CCCP (U) Can be substituted for other uncoupler
ce4Rot Rotenone (Rot)
ce5S Succinate (S)
1Dig Digitonin (Dig)
1c Cytochrome c (c)
2Ama Antimycin A (Ama)
Step Chemical(s) and link(s) Comments
## AsTm Ascorbate (As) and TMPD (Tm)
## Azd Azide (Azd)
Suggested stock concentrations are shown in the specific DL-Protocol.

References

 YearReferenceOrganismTissue;cell
Doerrier 2018 Methods Mol Biol2018Doerrier C, Garcia-Souza LF, Krumschnabel G, Wohlfarter Y, Mészáros AT, Gnaiger E (2018) High-Resolution FluoRespirometry and OXPHOS protocols for human cells, permeabilized fibers from small biopsies of muscle, and isolated mitochondria. Methods Mol Biol 1782:31-70. https://doi.org/10.1007/978-1-4939-7831-1_3Human
Mouse
Rat
Saccharomyces cerevisiae
Heart
Skeletal muscle
Endothelial;epithelial;mesothelial cell
Blood cells
HEK
Platelet
Stadlmann 2006 Cell Biochem Biophys2006Stadlmann S, Renner K, Pollheimer J, Moser PL, Zeimet AG, Offner FA, Gnaiger E (2006) Preserved coupling of oxidative phosphorylation but decreased mitochondrial respiratory capacity in IL-1ß treated human peritoneal mesothelial cells. Cell Biochem Biophys 44:179-86.HumanEndothelial;epithelial;mesothelial cell
  • Stadlmann S, Renner K, Pollheimer J, Moser PL, Zeimet AG, Offner FA, Gnaiger E (2006) Preserved coupling of oxidative phosphorylation but decreased mitochondrial respiratory capacity in IL-1ß treated human peritoneal mesothelial cells. Cell Biochem Biophys 44:179-86. - »Bioblast link«


MitoPedia concepts: SUIT protocol, SUIT A, Find 


MitoPedia methods: Respirometry