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Difference between revisions of "SUIT-003 O2 ce D037"

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{{MitoPedia
{{MitoPedia
|abbr=ceGlc
|abbr=CCP-ce-Crabtree(-Omy)
|description=[[File:Ce1;ce1Glc;ce2(Omy);ce3U;ce4Ama.png|350px]]
|description=[[File:Ce1;ce1Glc;ce2(Omy);ce3U;ce4Ama.png|350px]]
|info='''A''' Coupling control protocol and Crabtree effect test -'''[[SUIT-003]]'''
|info='''A''' [[Coupling control protocol]] and [[Crabtree effect]] - '''[[SUIT-003]]'''
|application=O2
|application=O2
|SUIT number=D037_ce1;ce1Glc;(ce2Omy);ce3U;ce4Ama
|SUIT number=D037_ce1;ce1Glc;(ce2Omy);ce3U;ce4Ama
}}
}}
::: '''[[MitoPedia: SUIT]]'''
::: '''[[MitoPedia: SUIT]]'''
::: '''[[Categories of SUIT protocols |SUIT-category]]:''' ceGlc
::: '''[[SUIT protocol pattern]]:''' ce1;ce1Glc;(ce2Omy);ce3U-
::: '''[[SUIT protocol pattern]]:''' complex cell [[coupling control protocol]] ce1;ce1Glc;(ce2Omy);ce3U-
 
SUIT-003 O2 ce D037 has been designed to study the regulation of the [[coupling control state]] and respiration by glucose ([[Crabtree effect]]) of intact cells on [[ROUTINE]]. To obtain more information about Crabtree effect, this protocol can be used in parallel with [[SUIT-003 O2 ce D038]]. SUIT-003 O2 ce D037 follows a modular approach and can be easily used in combination with the assessment of complex IV capacity and respirometric cell viability test. This protocol allows us to omit oligomycin, therefore the LEAK-respiration.If the aim is to analyse only Crabtree effetc, it is recommended to skip the oligomycin step. If there is an interest in studying coupling control, oligomycin should be added to promote LEAK-respiration.


The CCP-ce-Crabtree (SUIT-003 O2 ce D037) is designed to study [[coupling control state| coupling control]] in living cells and the effect of glucose (or fructose; [[Crabtree effect]]) on [[ROUTINE respiration]]. This protocol allows us to omit oligomycin, therefore the LEAK-respiration.If the aim is to analyse only Crabtree effetc, it is recommended to skip the oligomycin step. If there is an interest in studying coupling control, oligomycin should be added to promote LEAK-respiration. SUIT-003 O2 ce D037 CCP-ceVI can be extended by the cell viability test and the Complex IV module. To obtain more information about the Crabtree effect, CCP-ce-Crabtree(-Omy) is used in parallel with [[SUIT-003 O2 ce D038]] (+Omy).


__TOC__
__TOC__
  Communicated by [[Komlodi T]], [[Garcia-Souza LF]], [[Cardoso LH]] and [[Gnaiger E]] (last update 2019-04-03)
  Communicated by [[Komlodi T]], [[Garcia-Souza LF]], [[Cardoso LH]], [[Gnaiger E]] (last update 2019-06-06)


{{Template:SUIT-003 O2 ce D037}}
{{Template:SUIT-003 O2 ce D037}}


== Strengths and limitations ==
== Strengths and limitations ==
:::* The SUIT-003 O2 ce D037 is a cell coupling control protocol. The total cell count (''N''<sub>ce</sub>) is the sum of viable cells (''N''<sub>vce</sub>) and dead cells (''N''<sub>dce</sub>).
:::* The SUIT-003 O2 ce D037 is a coupling control protocol for living cells. The total cell count (''N''<sub>ce</sub>) is the sum of viable cells (''N''<sub>vce</sub>) and dead cells (''N''<sub>dce</sub>).
:::* This protocol can be extended with the cell viability test module (See CCV [[SUIT-003 O2 ce-pce D020]]).
:::* This protocol can be extended with the cell viability test module (See CCV [[SUIT-003 O2 ce-pce D020]]).
:::* CIV activity can also be measured after the cell viability test module.
:::* CIV activity can also be measured after the cell viability test module.

Revision as of 07:39, 6 June 2019


high-resolution terminology - matching measurements at high-resolution


SUIT-003 O2 ce D037

Description

Ce1;ce1Glc;ce2(Omy);ce3U;ce4Ama.png

Abbreviation: CCP-ce-Crabtree(-Omy)

Reference: A Coupling control protocol and Crabtree effect - SUIT-003

SUIT number: D037_ce1;ce1Glc;(ce2Omy);ce3U;ce4Ama

O2k-Application: O2

MitoPedia: SUIT
SUIT protocol pattern: ce1;ce1Glc;(ce2Omy);ce3U-

The CCP-ce-Crabtree (SUIT-003 O2 ce D037) is designed to study coupling control in living cells and the effect of glucose (or fructose; Crabtree effect) on ROUTINE respiration. This protocol allows us to omit oligomycin, therefore the LEAK-respiration.If the aim is to analyse only Crabtree effetc, it is recommended to skip the oligomycin step. If there is an interest in studying coupling control, oligomycin should be added to promote LEAK-respiration. SUIT-003 O2 ce D037 CCP-ceVI can be extended by the cell viability test and the Complex IV module. To obtain more information about the Crabtree effect, CCP-ce-Crabtree(-Omy) is used in parallel with SUIT-003 O2 ce D038 (+Omy).

Communicated by Komlodi T, Garcia-Souza LF, Cardoso LH, Gnaiger E (last update 2019-06-06)
MitoPedia: SUIT

Steps and respiratory states

Ce1;ce1Glc;ce2(Omy);ce3U;ce4Ama.png

Step State Pathway Q-junction Comment - Events (E) and Marks (M)
ce1 ROUTINE ce1
  • ROUTINE respiration in the physiological coupling state R. Externally added permeable substrates could contribute to this respiratory state.
ce1Glc ROUTINE ce1;ce1Glc
  • ROUTINE respiration in the physiological coupling state R. Externally added permeable substrates could contribute to this respiratory state.
  • Glucose is added to test Crabtree effect.
(ce2Omy) L(Omy) ce1;ce1Glc;(ce2Omy)
  • Non-phosphorylating resting state (LEAK state); LEAK-respiration, L(Omy), after blocking the ATP synthase with oligomycin.
  • If the aim is to analyse only Crabtree effect, it is recommended to skip this step. However, if there is also interest in studying coupling control, Omy can be added at this point to reach LEAK.
ce3U E ce1;ce1Glc;(ce2Omy);ce3U
ce4Ama ROX ce1;ce1Glc;(ce2Omy);ce3U;ce4Ama
  • Rox is the residual oxygen consumption in the ROX state, due to oxidative side reactions, estimated either after inhibition of CIII (e.g. antimycin A, myxothiazol), CIV (e.g. Cyanide) or in the absence of endogenous fuel-substrates. Rox is subtracted from oxygen flux as a baseline for all respiratory states, to obtain mitochondrial respiration.


Questions.jpg


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Strengths and limitations

  • The SUIT-003 O2 ce D037 is a coupling control protocol for living cells. The total cell count (Nce) is the sum of viable cells (Nvce) and dead cells (Ndce).
  • This protocol can be extended with the cell viability test module (See CCV SUIT-003 O2 ce-pce D020).
  • CIV activity can also be measured after the cell viability test module.
+ Reasonable duration of the experiment.
+ To obtain more information about Crabtree effect, this protocol can be used in parallel with SUIT-003 O2 ce D038. In SUIT-003 O2 ce D037, the addition of glucose in the ROUTINE state can lead to increase in ATP production by glycolysis, which can indirectly decrease respiration. In SUIT-003 O2 ce D038, with addition of glucose in ET state, this effect is bypassed, and only the direct effect of glucose on the electron transfer system is tested.
- Careful washing is required after the experiment to avoid carry-over of uncoupler.

Compare SUIT protocols


References

MitoPedia concepts: SUIT protocol, SUIT A, Find 


MitoPedia methods: Respirometry