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Difference between revisions of "MitoPedia: Terms and abbreviations"

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== SI, IUPAC and MitoEAGLE recommendations ==
:::: IUPAC guidelines are followed for general terms of physical chemistry<ref>Cohen ER, Cvitas T, Frey JG, Holmström B, Kuchitsu K, Marquardt R, Mills I, Pavese F, Quack M, Stohner J, Strauss HL, Takami M, Thor HL (2008) Quantities, Units and Symbols in Physical Chemistry, IUPAC Green Book, 3rd Edition, 2nd Printing, IUPAC & RSC Publishing, Cambridge. - [[Cohen 2008 IUPAC Green Book |»Bioblast link«]]</ref><sup>,</sup><ref>International Union of Biochemistry and Molecular Biology: Recommendations for terminology and databases for biochemical thermodynamics. - [http://www.chem.qmul.ac.uk/iubmb/thermod2/ »Open Access«]</ref><sup>,</sup><ref>International Union of Biochemistry (1981) Symbolism and terminology in enzyme kinetics. - [http://www.chem.qmul.ac.uk/iubmb/kinetics/ »Open Access«]</ref>, extended by concepts of mitochondrial physiology<ref>Gnaiger Erich et al ― MitoEAGLE Task Group (2020) Mitochondrial physiology. Bioenerg Commun 2020.1. doi:10.26124/bec:2020-0001.v1</ref>,<ref> Gnaiger E (2020) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 5th ed. Bioenerg Commun 2020.2. https://doi.org/10.26124/bec:2020-0002</ref> and nonequilibrium thermodynamics<ref>Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. - [[Gnaiger 1993 Pure Appl Chem |»Bioblast link«]]</ref>.
 
:::: According to [https://www.bioenergetics-communications.org/index.php/bec/authorguidelines BEC guidelines], 'manuscripts must adhere to SI units and IUPAC recommendations. MitoEAGLE recommendations on terms and symbols are to be implemented'.
 
== Harmonization ==
:::: Harmonization of some terms in mitochondrial physiology links separate 'subcultures' in publication. Ambiguities are pointed out for clarification of concepts. A platform-independent terminology is preferred. See also '''Table 2. Harmonization of terminology on respiratory states'''<ref>Zdrazilova L, Hansikova H, Gnaiger E (2022) Comparable respiratory activity in attached and suspended human fibroblasts. PLoS ONE 17:e0264496. https://doi.org/10.1371/journal.pone.0264496</ref>.
 
:::: <span style="background:#eaecf0">'''Table 1. Some platform-independent and platform-specific terms in mitochondrial physiology
:::: {| class="wikitable"
|+
|-
! Symbol !! Platform-independent term !! Platform-specific term
|-
| ce || living cells || intact cells
|-
| ''R'' || ROUTINE respiration in ROUTINE state || basal respiration in basal state
|-
| ''L'' || LEAK respiration || proton leak
|-
| ''E'' || electron transfer ET capacity || maximum respiration
|-
| ''R-L'' || net ROUTINE respiration || ATP production or ATP-linked respiration
|-
| ''E-R'' || ''E-R'' reserve capacity || spare capacity
|-
| ''Rox'' || residual oxygen consumption || nonmitochondrial respiration
|}
 
 
== References ==
<references/>
 
== MitoPedia terms and abbreviations ==
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| mainlabel=Term
|?Has abbr=Abbreviation
|?Description
|limit=10000
|format=table
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|order=ascending
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Latest revision as of 14:31, 19 October 2022

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