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O2k-Publications: Topics
- Mitochondria and Cell Research - the Oroboros Ecosystem
Contents
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (354 entries) 354 484 2 Exercise physiology;nutrition;life style 645 891 3 Comparative MiP;environmental MiP 297 434 4 Pharmacology;toxicology 705 841 5 mt-Biogenesis;mt-density 234 308 6 Genetic knockout;overexpression 527 585 7 Instruments;methods 218 323
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 236 362 2 Alzheimer's 62 83 3 Autism 3 7 4 Cancer 306 404 5 Cardiovascular 157 223 6 COPD 8 11 7 Diabetes 307 407 8 Inherited 60 81 9 Infectious 38 51 10 Myopathy 55 66 11 Neurodegenerative 148 203 12 Obesity 211 351 13 Parkinson's 52 83 14 Sepsis 61 71 15 Other 231 299
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 89 146 2 Cryopreservation 34 57 3 Hypoxia 76 108 4 Ischemia-reperfusion 296 398 5 Oxidative stress;RONS 534 741 6 Permeability transition 67 88 7 Temperature: hypothermia; hyperthermia 88 105
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 4 5 2 Zebrafish (» Fishes) 11 16 3 Drosophila (» Hexapods) 53 68 4 Caenorhabditis elegans (» Nematodes) 19 27 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 55 75 7 Comparative MiP 297 434
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 11 21 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14 3 Amphibians frogs, toads, salamanders 10 14 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 100 130 5 Hexapods insects, springtails; » Drosophila 31 40 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16 8 Molluscs gastropods, cephalopods, bivalves 19 29 9 Nematodes » Caenorhabditis elegans 4 9 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59 12 Plants 27 47 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 31 43 14 Eubacteria true bacteria, cyanobacteria, spirochetes 23 39 15 Archaea archaebacteria 0 6
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 153 214 2 Genital 82 111 3 Heart 623 804 4 Kidney 125 153 5 Liver 553 711 6 Lung;Gill 49 64 7 Nervous system 520 620 8 Skeletal muscle 935 1150
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 221 271 2 Endothelial;epithelial;mesothelial cell 225 255 3 Fibroblast 172 218 4 Islet cell;pancreas;thymus 45 55 5 Leukemia 22 25 6 Lymphocyte 48 62 7 Platelets 102 120 8 Stem cells 31 41
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 13 2 HEK 73 91 3 HeLa 30 43 4 Neuroblastoma 33 36 5 HUVEC 19 22 6 Macrophage-derived cell lines 24 33 7 Other cells and cell lines 271 308
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 44 214 2 Intact organ 21 34 3 Living cells 958 1057 4 Permeabilized cells 565 596 5 Permeabilized tissue 951 1035 6 Homogenate 303 338 7 Isolated mitochondria 1096 1368 8 SMP Submitochondrial particles 9 21 9 Chloroplasts 1 9 10 Enzyme 39 68 11 Oxidase and biochemical oxidation 38 48
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 20 24 2 Complex I CI 430 514 3 Complex II;succinate dehydrogenase CII 381 450 4 Complex III CIII 290 334 5 Complex IV;cytochrome c oxidase CIV 392 459 6 Complex V;ATP synthase CV 211 249 7 mt-Inner membrane transporter 31 43 8 Marker enzyme 50 71 9 Supercomplex 41 54 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 76 96 11 Uncoupling protein 58 63
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 145 190 2 ATP production 71 104 3 Aerobic glycolysis 41 76 4 Amino acid 9 18 5 Calcium 88 133 6 Coupling efficiency;uncoupling 71 132 7 Cyt c Cytochrome c 38 47 8 Fatty acid FA substrate kinetics 116 140 9 Flux control 46 74 10 Inhibitor Inhibitor kinetics 127 155 11 Ion;substrate transport 55 95 12 mt-Membrane potential Mitochondrial membrane potential
- Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
.::: Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
98 148 13 Oxygen kinetics 97 128 14 Q-junction effect 6 8 15 Redox state 45 70 16 Substrate Fuel substrate kinetics 175 227 17 Temperature Temperature dependence 59 82 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 52 68
Coupling-control
# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2378 2574 2 R 
ROUTINE respiration
Physiological state, living cells 724 783 3 E 
ET capacity
Maximal noncoupled respiration 1656 1740 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 2064 2192
Pathway control
# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 496 590 2 N N-pathway control state NADH-linked, level 4 2013 2133 3 S S-pathway control state Succinate-linked, level 3 1349 1420 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 127 145 5 DQ Duorquinol-linked, level 2 17 21 6 CIV Complex IV single step Ascorbate & TMPD, level 1 568 594 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1253 1299 8 Other 125 141 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 1164 1206
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 935 1150 2 O2k-Publications: Human heart 623 804 3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 27 33
