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O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4637


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (361 entries) 361 512
2 Exercise physiology;nutrition;life style 742 1033
3 Comparative MiP;environmental MiP 319 471
4 Pharmacology;toxicology 836 1033
5 mt-Biogenesis;mt-density 246 329
6 Genetic knockout;overexpression 640 708
7 Instruments;methods 273 413


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 270 411
2 Alzheimer's 70 93
3 Autism 7 11
4 Cancer 353 507
5 Cardiovascular 205 286
6 COPD 9 12
7 Diabetes 346 463
8 Inherited 63 98
9 Infectious 50 69
10 Myopathy 75 87
11 Neurodegenerative 168 234
12 Obesity 253 417
13 Parkinson's 67 104
14 Sepsis 74 84
15 Other 282 354


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 92 155
2 Cryopreservation 41 67
3 Hypoxia 111 221
4 Ischemia-reperfusion 325 432
5 Oxidative stress;RONS 576 830
6 Permeability transition 71 96
7 Temperature: hypothermia; hyperthermia 91 112


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1425 2034
2 Pig 89 103
3 Horse 27 34
4 Bovines 24 76
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1352 1579
9 Rat 873 1128
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 52 83
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 5 7
2 Zebrafish Fishes) 14 21
3 Drosophila Hexapods) 63 89
4 Caenorhabditis elegans Nematodes) 24 33
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 61 88
7 Comparative MiP 319 471


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 15 27
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153
5 Hexapods insects, springtails; » Drosophila 33 42
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 25 42
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62
12 Plants 28 55
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 41 58
14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 48
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 185 258
2 Genital 92 123
3 Heart 721 933
4 Kidney 148 181
5 Liver 636 830
6 Lung;Gill 58 81
7 Nervous system 604 728
8 Skeletal muscle 1084 1347


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 249 315
2 Endothelial;epithelial;mesothelial cell 255 290
3 Fibroblast 200 264
4 Islet cell;pancreas;thymus 54 66
5 Leukemia 22 25
6 Lymphocyte 56 74
7 Platelets 120 150
8 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 15
2 HEK 93 114
3 HeLa 37 54
4 Neuroblastoma 42 48
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 36
7 Other cells and cell lines 292 338


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 52 247
2 Intact organ 23 38
3 Living cells 1138 1284
4 Permeabilized cells 703 741
5 Permeabilized tissue 1097 1190
6 Homogenate 371 415
7 Isolated mitochondria 1246 1549
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 3 11
10 Enzyme 39 86
11 Oxidase and biochemical oxidation 39 49


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 27
2 Complex I CI 458 597
3 Complex II;succinate dehydrogenase CII 410 637
4 Complex III CIII 299 359
5 Complex IV;cytochrome c oxidase CIV 405 484
6 Complex V;ATP synthase CV 219 266
7 mt-Inner membrane transporter 31 44
8 Marker enzyme 58 84
9 Supercomplex 48 75
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 108
11 Uncoupling protein 60 66


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 152 206
2 ATP production 78 122
3 Aerobic glycolysis 49 94
4 Amino acid 9 20
5 Calcium 104 177
6 Coupling efficiency;uncoupling 81 158
7 Cyt c Cytochrome c 42 56
8 Fatty acid FA substrate kinetics 127 159
9 Flux control 54 86
10 Inhibitor Inhibitor kinetics 131 169
11 Ion;substrate transport 63 114
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


113 175
13 Oxygen kinetics 105 145
14 Q-junction effect 13 56
15 Redox state 54 94
16 Substrate Fuel substrate kinetics 181 236
17 Temperature Temperature dependence 73 100
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 55 70


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2820 3046
2 R ROUTINE ROUTINE respiration Physiological state, living cells 869 954
3 E ET ET capacity Maximal noncoupled respiration 2022 2128
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2557 2711


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 601 743
2 N N-pathway control state NADH-linked, level 4 2431 2578
3 S S-pathway control state Succinate-linked, level 3 1654 1758
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 153 178
5 DQ Duorquinol-linked, level 2 25 30
6 CIV Complex IV single step Ascorbate & TMPD, level 1 689 717
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1549 1604
8 Other 130 146
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1489 1541


Additional labels

# O2k-Publications MitoPedia: Comment O2k Total
1 AmR Amplex UltraRed Extrinsic fluorophore for measurement of hydrogen peroxide production 224 229
2 MgG Magnesium Green Extrinsic fluorophore for measurement of ATP production 17 18
3 CaG Calcium Green Extrinsic fluorophore for measurement of Ca2+ production 8 9
4 PBMCs Peripheral blood mononuclear cell (PBMC) 50 55
5 Photosynthesis Photosynthesis 4 53
6 Tissue normoxia Normoxia 17 27


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1084 1347
2 O2k-Publications: Human heart 721 933
3 O2k-Publications: Skeletal muscle - human vs mouse 38 47
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4637 4637
2 TIP2k 44 44
3 O2k-Fluorometry 338 344
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


54 58
7 Ca2+ O2k-ISE Module 10 10
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 24 25
8 O2k-Protocol 71 93
9 Theoretical background 13 69
10 Instruments;methods 273 413
11 O2k-Fluorometry - Fluorophores 22 22
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35