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O2k-Publications: Topics
- Mitochondria and Cell Research - the Oroboros Ecosystem
- » Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
- » O2k-Publications alert - » Recent O2k-Publications
- » O2k-briefs
- » O2k-Publications - chronological: 4637
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (361 entries) 361 512 2 Exercise physiology;nutrition;life style 742 1033 3 Comparative MiP;environmental MiP 319 471 4 Pharmacology;toxicology 836 1033 5 mt-Biogenesis;mt-density 246 329 6 Genetic knockout;overexpression 640 708 7 Instruments;methods 273 413
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 270 411 2 Alzheimer's 70 93 3 Autism 7 11 4 Cancer 353 507 5 Cardiovascular 205 286 6 COPD 9 12 7 Diabetes 346 463 8 Inherited 63 98 9 Infectious 50 69 10 Myopathy 75 87 11 Neurodegenerative 168 234 12 Obesity 253 417 13 Parkinson's 67 104 14 Sepsis 74 84 15 Other 282 354
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 92 155 2 Cryopreservation 41 67 3 Hypoxia 111 221 4 Ischemia-reperfusion 325 432 5 Oxidative stress;RONS 576 830 6 Permeability transition 71 96 7 Temperature: hypothermia; hyperthermia 91 112
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 5 7 2 Zebrafish (» Fishes) 14 21 3 Drosophila (» Hexapods) 63 89 4 Caenorhabditis elegans (» Nematodes) 24 33 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 61 88 7 Comparative MiP 319 471
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 15 27 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153 5 Hexapods insects, springtails; » Drosophila 33 42 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20 8 Molluscs gastropods, cephalopods, bivalves 25 42 9 Nematodes » Caenorhabditis elegans 5 11 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62 12 Plants 28 55 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 41 58 14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 48 15 Archaea archaebacteria 0 7
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 185 258 2 Genital 92 123 3 Heart 721 933 4 Kidney 148 181 5 Liver 636 830 6 Lung;Gill 58 81 7 Nervous system 604 728 8 Skeletal muscle 1084 1347
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 249 315 2 Endothelial;epithelial;mesothelial cell 255 290 3 Fibroblast 200 264 4 Islet cell;pancreas;thymus 54 66 5 Leukemia 22 25 6 Lymphocyte 56 74 7 Platelets 120 150 8 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 15 2 HEK 93 114 3 HeLa 37 54 4 Neuroblastoma 42 48 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 36 7 Other cells and cell lines 292 338
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 52 247 2 Intact organ 23 38 3 Living cells 1138 1284 4 Permeabilized cells 703 741 5 Permeabilized tissue 1097 1190 6 Homogenate 371 415 7 Isolated mitochondria 1246 1549 8 SMP Submitochondrial particles 10 28 9 Chloroplasts 3 11 10 Enzyme 39 86 11 Oxidase and biochemical oxidation 39 49
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 21 27 2 Complex I CI 458 597 3 Complex II;succinate dehydrogenase CII 410 637 4 Complex III CIII 299 359 5 Complex IV;cytochrome c oxidase CIV 405 484 6 Complex V;ATP synthase CV 219 266 7 mt-Inner membrane transporter 31 44 8 Marker enzyme 58 84 9 Supercomplex 48 75 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 108 11 Uncoupling protein 60 66
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 152 206 2 ATP production 78 122 3 Aerobic glycolysis 49 94 4 Amino acid 9 20 5 Calcium 104 177 6 Coupling efficiency;uncoupling 81 158 7 Cyt c Cytochrome c 42 56 8 Fatty acid FA substrate kinetics 127 159 9 Flux control 54 86 10 Inhibitor Inhibitor kinetics 131 169 11 Ion;substrate transport 63 114 12 mt-Membrane potential Mitochondrial membrane potential
- Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
113 175 13 Oxygen kinetics 105 145 14 Q-junction effect 13 56 15 Redox state 54 94 16 Substrate Fuel substrate kinetics 181 236 17 Temperature Temperature dependence 73 100 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 55 70
Coupling-control
# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2820 3046 2 R 
ROUTINE respiration
Physiological state, living cells 869 954 3 E 
ET capacity
Maximal noncoupled respiration 2022 2128 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 2557 2711
Pathway control
# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 601 743 2 N N-pathway control state NADH-linked, level 4 2431 2578 3 S S-pathway control state Succinate-linked, level 3 1654 1758 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 153 178 5 DQ Duorquinol-linked, level 2 25 30 6 CIV Complex IV single step Ascorbate & TMPD, level 1 689 717 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1549 1604 8 Other 130 146 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 1489 1541
Additional labels
# O2k-Publications MitoPedia: Comment O2k Total 1 AmR Amplex UltraRed Extrinsic fluorophore for measurement of hydrogen peroxide production 224 229 2 MgG Magnesium Green Extrinsic fluorophore for measurement of ATP production 17 18 3 CaG Calcium Green Extrinsic fluorophore for measurement of Ca2+ production 8 9 4 PBMCs Peripheral blood mononuclear cell (PBMC) 50 55 5 Photosynthesis Photosynthesis 4 53 6 Tissue normoxia Normoxia 17 27
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 1084 1347 2 O2k-Publications: Human heart 721 933 3 O2k-Publications: Skeletal muscle - human vs mouse 38 47
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 29 35
