O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and cell research
O2k-Publications: chronological
Publications in the MiPMap


» Recent O2k-Publications
» O2k-Publications - chronological: 3290


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (325 entries) 325 444
2 Exercise physiology;nutrition;life style 540 719
3 Comparative MiP;environmental MiP 259 385
4 Pharmacology;toxicology 506 586
5 mt-Biogenesis;mt-density 226 292
6 Genetic knockout;overexpression 406 460
7 Instruments;methods 187 284


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 204 307
2 Alzheimer's 54 72
3 Autism 2 2
4 Cancer 256 340
5 Cardiovascular 129 167
6 COPD 8 10
7 Diabetes 251 324
8 Inherited 51 70
9 Infectious 25 30
10 Myopathy 46 55
11 Neurodegenerative 134 180
12 Obesity 167 225
13 Parkinson's 50 75
14 Sepsis 55 64
15 Other 173 233


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 73 129
2 Cryopreservation 31 55
3 Hypoxia 59 87
4 Ischemia-reperfusion 268 368
5 Oxidative stress;RONS 470 665
6 Permeability transition 51 68
7 Temperature: hypothermia; hyperthermia 80 96


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1018 1396
2 Pig 73 85
3 Horse 21 27
4 Bovines 20 62
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 20
8 Mouse 908 1093
9 Rat 682 889
10 Guinea pig 17 30
11 Other mammals including only mammals that are not listed as mammalian species above 43 71
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 3 4
2 Zebrafish Fishes) 7 12
3 Drosophila Hexapods) 40 53
4 Caenorhabditis elegans Nematodes) 10 17
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 52 69
7 Comparative MiP 259 385


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 10 20
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 90 120
5 Hexapods insects, springtails; » Drosophila 26 34
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 17 34
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 16 26
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 10 14
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 47 58
12 Plants 26 45
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38
14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 124 153
2 Genital 67 91
3 Heart 539 705
4 Kidney 107 134
5 Liver 479 626
6 Lung;Gill 40 53
7 Nervous system 461 555
8 Skeletal muscle 792 985


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 177 223
2 Endothelial;epithelial;mesothelial cell 181 209
3 Fibroblast 156 200
4 Islet cell;pancreas;thymus 39 49
5 Lymphocyte 46 58
6 Platelet 82 96
7 Stem cells 23 33


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 63 82
3 HeLa 24 36
4 Neuroblastoma 23 24
5 HUVEC 19 22
6 Macrophage-derived cell lines 20 29
7 Other cells and cell lines 229 270


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 38 107
2 Intact organ 20 31
3 Living cells 781 876
4 Permeabilized cells 456 485
5 Permeabilized tissue 796 875
6 Homogenate 240 273
7 Isolated mitochondria 937 1196
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 38 66
11 Oxidase and biochemical oxidation 36 46


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 19 23
2 Complex I CI 381 462
3 Complex II;succinate dehydrogenase CII 339 408
4 Complex III CIII 254 299
5 Complex IV;cytochrome c oxidase CIV 354 420
6 Complex V;ATP synthase CV 182 222
7 mt-Inner membrane transporter 28 38
8 Marker enzyme 48 69
9 Supercomplex 36 47
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 62 80
11 Uncoupling protein 48 54


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 137 178
2 ATP production 58 91
3 Aerobic glycolysis 39 74
4 Amino acid 6 15
5 Calcium 63 93
6 Coupling efficiency;uncoupling 68 126
7 Cyt c Cytochrome c 37 45
8 Fatty acid FA substrate kinetics 106 127
9 Flux control 43 68
10 Inhibitor Inhibitor kinetics 119 146
11 Ion;substrate transport 45 82
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


78 127
13 Oxygen kinetics 86 116
14 Q-junction effect 5 6
15 Redox state 44 68
16 Substrate Fuel substrate kinetics 167 218
17 Temperature Temperature dependence 51 74
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 50 65


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 1985 2168
2 R ROUTINE ROUTINE respiration Physiological state, living cells 591 650
3 E ET ET-capacity Maximal noncoupled respiration 1346 1429
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1571 1691


Pathway control states

# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 408 501
2 N N-pathway control state NADH-linked, level 4 1614 1718
3 S S-pathway control state Succinate-linked, level 3 1079 1147
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 98 115
5 DQ Duorquinol-linked, level 2 14 17
6 CIV Complex IV single step Ascorbate & TMPD, level 1 463 489
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 999 1041
8 Other 120 134
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 893 934


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 792 985
2 O2k-Publications: Human heart 539 705
3 O2k-Publications: Skeletal muscle - human vs mouse 31 40
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3290 3290
2 TIP2k 40 40
3 O2k-Fluorometry 175 183
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


5 6
5 Nitric Oxide 11 11
6 TPP+ ISE-Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


43 47
7 Calcium 8 8
8 O2k- Spectrophotometer 9 9
9 O2k-Manual 20 21
8 O2k-Protocol 58 78
9 Theoretical background 11 65
10 Instruments;methods 187 284
11 O2k-Fluorometry - Fluorophores 107 107
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 17 26