O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4142


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (356 entries) 356 496
2 Exercise physiology;nutrition;life style 679 931
3 Comparative MiP;environmental MiP 301 440
4 Pharmacology;toxicology 768 908
5 mt-Biogenesis;mt-density 243 323
6 Genetic knockout;overexpression 570 631
7 Instruments;methods 235 355


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 245 379
2 Alzheimer's 65 87
3 Autism 6 10
4 Cancer 319 423
5 Cardiovascular 176 244
6 COPD 9 12
7 Diabetes 321 423
8 Inherited 61 82
9 Infectious 43 57
10 Myopathy 59 70
11 Neurodegenerative 153 211
12 Obesity 225 367
13 Parkinson's 54 86
14 Sepsis 66 76
15 Other 247 316


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 91 148
2 Cryopreservation 38 61
3 Hypoxia 85 131
4 Ischemia-reperfusion 305 409
5 Oxidative stress;RONS 546 758
6 Permeability transition 68 89
7 Temperature: hypothermia; hyperthermia 89 108


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1293 1809
2 Pig 85 97
3 Horse 25 31
4 Bovines 21 67
5 Cat 2 4
6 Dog 12 29
7 Rabbit 16 21
8 Mouse 1181 1387
9 Rat 819 1048
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 49 77
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 5
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 55 72
4 Caenorhabditis elegans Nematodes) 22 30
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 58 80
7 Comparative MiP 301 440


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 11 16
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 106 139
5 Hexapods insects, springtails; » Drosophila 31 40
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 39
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 22 39
9 Nematodes » Caenorhabditis elegans 5 10
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 16
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 50 61
12 Plants 29 54
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 33 45
14 Eubacteria true bacteria, cyanobacteria, spirochetes 26 45
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 163 225
2 Genital 86 116
3 Heart 654 844
4 Kidney 129 158
5 Liver 581 745
6 Lung;Gill 53 68
7 Nervous system 549 652
8 Skeletal muscle 989 1212


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 225 277
2 Endothelial;epithelial;mesothelial cell 233 264
3 Fibroblast 188 244
4 Islet cell;pancreas;thymus 46 58
5 Leukemia 22 25
6 Lymphocyte 54 69
7 Platelets 110 128
8 Stem cells 35 45


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 77 95
3 HeLa 35 50
4 Neuroblastoma 36 39
5 HUVEC 19 22
6 Macrophage-derived cell lines 25 34
7 Other cells and cell lines 279 318


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 47 228
2 Intact organ 22 35
3 Living cells 1033 1148
4 Permeabilized cells 615 648
5 Permeabilized tissue 1000 1085
6 Homogenate 323 360
7 Isolated mitochondria 1143 1424
8 SMP Submitochondrial particles 10 27
9 Chloroplasts 1 9
10 Enzyme 39 70
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 25
2 Complex I CI 444 530
3 Complex II;succinate dehydrogenase CII 391 463
4 Complex III CIII 297 344
5 Complex IV;cytochrome c oxidase CIV 402 472
6 Complex V;ATP synthase CV 216 256
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 54 76
9 Supercomplex 43 59
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 77 99
11 Uncoupling protein 59 64


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 146 192
2 ATP production 73 107
3 Aerobic glycolysis 42 82
4 Amino acid 9 18
5 Calcium 94 141
6 Coupling efficiency;uncoupling 76 141
7 Cyt c Cytochrome c 40 53
8 Fatty acid FA substrate kinetics 120 144
9 Flux control 50 80
10 Inhibitor Inhibitor kinetics 127 156
11 Ion;substrate transport 55 95
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


100 151
13 Oxygen kinetics 99 134
14 Q-junction effect 12 54
15 Redox state 48 76
16 Substrate Fuel substrate kinetics 178 230
17 Temperature Temperature dependence 63 87
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 53 68


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2536 2740
2 R ROUTINE ROUTINE respiration Physiological state, living cells 782 859
3 E ET ET capacity Maximal noncoupled respiration 1794 1890
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2241 2383


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 533 630
2 N N-pathway control state NADH-linked, level 4 2160 2295
3 S S-pathway control state Succinate-linked, level 3 1460 1541
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 135 155
5 DQ Duorquinol-linked, level 2 20 24
6 CIV Complex IV single step Ascorbate & TMPD, level 1 607 634
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1353 1404
8 Other 126 142
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1280 1329


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 989 1212
2 O2k-Publications: Human heart 654 844
3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4142 4142
2 TIP2k 41 41
3 O2k-Fluorometry 275 280
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


49 53
7 Ca2+ O2k-ISE Module 6 6
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 64 80
9 Theoretical background 12 68
10 Instruments;methods 235 355
11 O2k-Fluorometry - Fluorophores 20 20
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35