From Bioblast
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O2k-Publications: Topics
- Mitochondria and Cell Research
Contents
- 1 Mitochondrial physiology: MiP areas
- 2 Pathological states
- 3 Stress conditions
- 4 Organisms
- 5 Tissues and cells
- 6 Preparations
- 7 Enzymes
- 8 Regulation
- 9 Coupling control states
- 10 Pathway control states
- 11 MiPMap combinations - examples
- 12 O2k-Manuals and protocols and specific instrumental applications
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (332 entries) 332 453 2 Exercise physiology;nutrition;life style 579 766 3 Comparative MiP;environmental MiP 277 409 4 Pharmacology;toxicology 556 657 5 mt-Biogenesis;mt-density 227 298 6 Genetic knockout;overexpression 450 508 7 Instruments;methods 203 299
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 214 321 2 Alzheimer's 55 74 3 Autism 2 4 4 Cancer 273 363 5 Cardiovascular 135 174 6 COPD 8 10 7 Diabetes 268 349 8 Inherited 51 71 9 Infectious 26 31 10 Myopathy 52 61 11 Neurodegenerative 135 182 12 Obesity 173 234 13 Parkinson's 52 81 14 Sepsis 55 64 15 Other 192 254
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 74 124 2 Cryopreservation 32 55 3 Hypoxia 63 91 4 Ischemia-reperfusion 276 377 5 Oxidative stress;RONS 490 688 6 Permeability transition 54 73 7 Temperature: hypothermia; hyperthermia 82 99
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 3 4 2 Zebrafish (» Fishes) 9 14 3 Drosophila (» Hexapods) 47 61 4 Caenorhabditis elegans (» Nematodes) 13 20 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 52 70 7 Comparative MiP 277 409
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 10 20 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14 3 Amphibians frogs, toads, salamanders 9 13 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 93 122 5 Hexapods insects, springtails; » Drosophila 26 35 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 18 36 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16 8 Molluscs gastropods, cephalopods, bivalves 17 27 9 Nematodes » Caenorhabditis elegans 3 8 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 50 61 12 Plants 25 44 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38 14 Eubacteria true bacteria, cyanobacteria, spirochetes 19 35 15 Archaea archaebacteria 0 6
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 132 163 2 Genital 71 100 3 Heart 557 729 4 Kidney 108 135 5 Liver 507 658 6 Lung;Gill 40 52 7 Nervous system 477 572 8 Skeletal muscle 847 1041
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 185 232 2 Endothelial;epithelial;mesothelial cell 192 221 3 Fibroblast 160 205 4 Islet cell;pancreas;thymus 39 49 5 Lymphocyte 49 62 6 Platelet 88 104 7 Stem cells 24 34
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 13 2 HEK 64 81 3 HeLa 25 38 4 Neuroblastoma 27 30 5 HUVEC 19 22 6 Macrophage-derived cell lines 22 31 7 Other cells and cell lines 251 288
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 38 108 2 Intact organ 21 32 3 Living cells 823 918 4 Permeabilized cells 486 514 5 Permeabilized tissue 852 928 6 Homogenate 258 291 7 Isolated mitochondria 983 1243 8 SMP Submitochondrial particles 10 22 9 Chloroplasts 1 9 10 Enzyme 38 67 11 Oxidase and biochemical oxidation 36 46
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 20 23 2 Complex I CI 397 480 3 Complex II;succinate dehydrogenase CII 351 419 4 Complex III CIII 266 310 5 Complex IV;cytochrome c oxidase CIV 365 431 6 Complex V;ATP synthase CV 191 229 7 mt-Inner membrane transporter 29 41 8 Marker enzyme 48 69 9 Supercomplex 38 50 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 67 86 11 Uncoupling protein 53 58
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 143 184 2 ATP production 60 92 3 Aerobic glycolysis 39 74 4 Amino acid 9 18 5 Calcium 68 100 6 Coupling efficiency;uncoupling 70 128 7 Cyt c Cytochrome c 38 46 8 Fatty acid FA substrate kinetics 111 133 9 Flux control 44 69 10 Inhibitor Inhibitor kinetics 126 154 11 Ion;substrate transport 47 86 12 mt-Membrane potential Mitochondrial membrane potential
- » Keywords: Force and membrane potential
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
83 131 13 Oxygen kinetics 89 120 14 Q-junction effect 6 7 15 Redox state 44 68 16 Substrate Fuel substrate kinetics 170 221 17 Temperature Temperature dependence 55 78 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 52 67
Coupling control states
# O2k-Publications MitoPedia: Coupling control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2098 2283 2 R 
ROUTINE respiration
Physiological state, living cells 628 686 3 E 
ET-capacity
Maximal noncoupled respiration 1431 1512 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 1730 1851
Pathway control states
# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 431 524 2 N N-pathway control state NADH-linked, level 4 1726 1832 3 S S-pathway control state Succinate-linked, level 3 1167 1236 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 102 119 5 DQ Duorquinol-linked, level 2 15 18 6 CIV Complex IV single step Ascorbate & TMPD, level 1 489 514 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1062 1104 8 Other 121 136 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 961 1002
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 847 1041 2 O2k-Publications: Human heart 557 729 3 O2k-Publications: Skeletal muscle - human vs mouse 35 43
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 25 31
