O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research
O2k-Publications: chronological
Publications in the MiPMap


» Recent O2k-Publications
» O2k-Publications - chronological: 3335


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (326 entries) 326 446
2 Exercise physiology;nutrition;life style 552 731
3 Comparative MiP;environmental MiP 267 393
4 Pharmacology;toxicology 519 602
5 mt-Biogenesis;mt-density 226 292
6 Genetic knockout;overexpression 424 478
7 Instruments;methods 193 288


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 207 311
2 Alzheimer's 54 72
3 Autism 2 3
4 Cancer 258 342
5 Cardiovascular 129 168
6 COPD 8 10
7 Diabetes 253 328
8 Inherited 51 71
9 Infectious 25 30
10 Myopathy 48 57
11 Neurodegenerative 134 180
12 Obesity 167 225
13 Parkinson's 51 76
14 Sepsis 55 64
15 Other 178 238


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 73 129
2 Cryopreservation 32 55
3 Hypoxia 61 88
4 Ischemia-reperfusion 272 372
5 Oxidative stress;RONS 473 668
6 Permeability transition 52 69
7 Temperature: hypothermia; hyperthermia 80 96


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1036 1417
2 Pig 73 85
3 Horse 21 27
4 Bovines 20 62
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 20
8 Mouse 924 1108
9 Rat 691 900
10 Guinea pig 17 30
11 Other mammals including only mammals that are not listed as mammalian species above 43 71
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 3 4
2 Zebrafish Fishes) 7 12
3 Drosophila Hexapods) 42 55
4 Caenorhabditis elegans Nematodes) 10 17
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 52 70
7 Comparative MiP 267 393


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 10 20
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 91 121
5 Hexapods insects, springtails; » Drosophila 26 34
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 17 34
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 16 26
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 10 14
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 47 58
12 Plants 26 45
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38
14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 125 154
2 Genital 67 91
3 Heart 543 709
4 Kidney 108 135
5 Liver 489 638
6 Lung;Gill 40 53
7 Nervous system 467 559
8 Skeletal muscle 807 998


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 179 224
2 Endothelial;epithelial;mesothelial cell 183 210
3 Fibroblast 156 202
4 Islet cell;pancreas;thymus 39 49
5 Lymphocyte 46 58
6 Platelet 82 96
7 Stem cells 23 34


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 63 81
3 HeLa 24 37
4 Neuroblastoma 26 27
5 HUVEC 19 22
6 Macrophage-derived cell lines 20 29
7 Other cells and cell lines 244 284


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 38 107
2 Intact organ 20 31
3 Living cells 792 886
4 Permeabilized cells 461 488
5 Permeabilized tissue 814 890
6 Homogenate 247 279
7 Isolated mitochondria 950 1207
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 38 67
11 Oxidase and biochemical oxidation 36 46


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 23
2 Complex I CI 390 471
3 Complex II;succinate dehydrogenase CII 346 414
4 Complex III CIII 261 305
5 Complex IV;cytochrome c oxidase CIV 362 427
6 Complex V;ATP synthase CV 188 226
7 mt-Inner membrane transporter 28 38
8 Marker enzyme 48 69
9 Supercomplex 36 47
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 63 80
11 Uncoupling protein 49 54


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 140 181
2 ATP production 59 91
3 Aerobic glycolysis 39 74
4 Amino acid 7 16
5 Calcium 65 95
6 Coupling efficiency;uncoupling 69 127
7 Cyt c Cytochrome c 37 45
8 Fatty acid FA substrate kinetics 108 129
9 Flux control 44 69
10 Inhibitor Inhibitor kinetics 126 153
11 Ion;substrate transport 46 83
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


79 127
13 Oxygen kinetics 88 118
14 Q-junction effect 5 6
15 Redox state 44 68
16 Substrate Fuel substrate kinetics 169 220
17 Temperature Temperature dependence 51 74
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 67


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2011 2192
2 R ROUTINE ROUTINE respiration Physiological state, living cells 603 660
3 E ET ET-capacity Maximal noncoupled respiration 1365 1445
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1617 1735


Pathway control states

# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 417 510
2 N N-pathway control state NADH-linked, level 4 1641 1744
3 S S-pathway control state Succinate-linked, level 3 1102 1170
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 100 116
5 DQ Duorquinol-linked, level 2 14 17
6 CIV Complex IV single step Ascorbate & TMPD, level 1 470 494
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1015 1056
8 Other 121 135
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 910 949


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 807 998
2 O2k-Publications: Human heart 543 709
3 O2k-Publications: Skeletal muscle - human vs mouse 33 41
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3335 3335
2 TIP2k 40 40
3 O2k-Fluorometry 188 193
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 11 11
6 TPP+ ISE-Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


43 47
7 Calcium 8 8
8 O2k- Spectrophotometer 9 9
9 O2k-Manual 20 21
8 O2k-Protocol 64 81
9 Theoretical background 12 65
10 Instruments;methods 193 288
11 O2k-Fluorometry - Fluorophores 111 111
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 19 26