O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4721


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (364 entries) 364 518
2 Exercise physiology;nutrition;life style 759 1055
3 Comparative MiP;environmental MiP 326 478
4 Pharmacology;toxicology 845 1042
5 mt-Biogenesis;mt-density 249 332
6 Genetic knockout;overexpression 661 731
7 Instruments;methods 274 418


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 277 419
2 Alzheimer's 71 94
3 Autism 7 11
4 Cancer 356 516
5 Cardiovascular 208 290
6 COPD 10 13
7 Diabetes 350 468
8 Inherited 64 98
9 Infectious 50 69
10 Myopathy 78 90
11 Neurodegenerative 169 235
12 Obesity 256 424
13 Parkinson's 68 105
14 Sepsis 74 85
15 Other 293 365


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 93 157
2 Cryopreservation 41 67
3 Hypoxia 117 230
4 Ischemia-reperfusion 327 434
5 Oxidative stress;RONS 583 843
6 Permeability transition 71 96
7 Temperature: hypothermia; hyperthermia 92 113


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1456 2067
2 Pig 89 103
3 Horse 29 36
4 Bovines 24 76
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1384 1615
9 Rat 876 1132
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 53 84
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 5 7
2 Zebrafish Fishes) 16 23
3 Drosophila Hexapods) 65 91
4 Caenorhabditis elegans Nematodes) 24 33
5 Artemia Crustaceans) 12 19
6 Saccharomyces cerevisiae Fungi) 61 88
7 Comparative MiP 326 478


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 15 27
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153
5 Hexapods insects, springtails; » Drosophila 34 43
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 25 42
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 52 63
12 Plants 29 58
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 43 60
14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 51
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 188 263
2 Genital 92 123
3 Heart 726 938
4 Kidney 150 183
5 Liver 648 844
6 Lung;Gill 59 82
7 Nervous system 607 734
8 Skeletal muscle 1109 1375


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 256 322
2 Endothelial;epithelial;mesothelial cell 260 295
3 Fibroblast 207 271
4 Islet cell;pancreas;thymus 55 67
5 Leukemia 22 25
6 Lymphocyte 58 76
7 Platelets 123 153
8 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 14 16
2 HEK 95 116
3 HeLa 38 55
4 Neuroblastoma 43 50
5 HUVEC 20 23
6 Macrophage-derived cell lines 26 37
7 Other cells and cell lines 292 338


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 53 250
2 Intact organ 23 38
3 Living cells 1170 1319
4 Permeabilized cells 719 757
5 Permeabilized tissue 1117 1211
6 Homogenate 378 422
7 Isolated mitochondria 1266 1574
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 2 10
10 Enzyme 39 102
11 Oxidase and biochemical oxidation 39 49


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 27
2 Complex I CI 461 607
3 Complex II;succinate dehydrogenase CII 412 639
4 Complex III CIII 301 363
5 Complex IV;cytochrome c oxidase CIV 408 499
6 Complex V;ATP synthase CV 220 267
7 mt-Inner membrane transporter 31 44
8 Marker enzyme 59 85
9 Supercomplex 49 78
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 83 110
11 Uncoupling protein 60 66


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 152 209
2 ATP production 78 123
3 Aerobic glycolysis 49 97
4 Amino acid 9 21
5 Calcium 106 179
6 Coupling efficiency;uncoupling 84 166
7 Cyt c Cytochrome c 43 57
8 Fatty acid FA substrate kinetics 128 161
9 Flux control 54 86
10 Inhibitor Inhibitor kinetics 132 170
11 Ion;substrate transport 65 116
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


118 182
13 Oxygen kinetics 107 148
14 Q-junction effect 13 56
15 Redox state 58 98
16 Substrate Fuel substrate kinetics 181 237
17 Temperature Temperature dependence 74 101
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 56 71


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2875 3104
2 R ROUTINE ROUTINE respiration Physiological state, living cells 898 985
3 E ET ET capacity Maximal noncoupled respiration 2073 2184
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2620 2779


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 612 756
2 N N-pathway control state NADH-linked, level 4 2483 2631
3 S S-pathway control state Succinate-linked, level 3 1693 1801
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 158 184
5 DQ Duorquinol-linked, level 2 26 31
6 CIV Complex IV single step Ascorbate & TMPD, level 1 705 733
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1584 1641
8 Other 134 150
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1527 1579


Additional labels

# O2k-Publications MitoPedia: Comment O2k Total
1 AmR Amplex UltraRed Extrinsic fluorophore for measurement of hydrogen peroxide production 229 234
2 MgG Magnesium Green Extrinsic fluorophore for measurement of ATP production 18 19
3 CaG Calcium Green Extrinsic fluorophore for measurement of Ca2+ production 8 9
4 PBMCs Peripheral blood mononuclear cell (PBMC) 50 55
5 Photosynthesis Photosynthesis 4 54
6 Tissue normoxia Normoxia 17 27


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1109 1375
2 O2k-Publications: Human heart 726 938
3 O2k-Publications: Skeletal muscle - human vs mouse 40 49
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4721 4721
2 TIP2k 44 44
3 O2k-Fluorometry 352 358
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


54 58
7 Ca2+ O2k-ISE Module 11 11
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 24 25
8 O2k-Protocol 72 94
9 Theoretical background 13 69
10 Instruments;methods 274 418
11 O2k-Fluorometry - Fluorophores 22 22
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35
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