From Bioblast
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O2k-Publications: Topics
- Mitochondria and Cell Research
Contents
- 1 Mitochondrial physiology: MiP areas
- 2 Pathological states
- 3 Stress conditions
- 4 Organisms
- 5 Tissues and cells
- 6 Preparations
- 7 Enzymes
- 8 Regulation
- 9 Coupling control states
- 10 Pathway control states
- 11 MiPMap combinations - examples
- 12 O2k-Manuals and protocols and specific instrumental applications
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (326 entries) 326 446 2 Exercise physiology;nutrition;life style 552 731 3 Comparative MiP;environmental MiP 267 393 4 Pharmacology;toxicology 519 602 5 mt-Biogenesis;mt-density 226 292 6 Genetic knockout;overexpression 424 478 7 Instruments;methods 193 288
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 207 311 2 Alzheimer's 54 72 3 Autism 2 3 4 Cancer 258 342 5 Cardiovascular 129 168 6 COPD 8 10 7 Diabetes 253 328 8 Inherited 51 71 9 Infectious 25 30 10 Myopathy 48 57 11 Neurodegenerative 134 180 12 Obesity 167 225 13 Parkinson's 51 76 14 Sepsis 55 64 15 Other 178 238
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 73 129 2 Cryopreservation 32 55 3 Hypoxia 61 88 4 Ischemia-reperfusion 272 372 5 Oxidative stress;RONS 473 668 6 Permeability transition 52 69 7 Temperature: hypothermia; hyperthermia 80 96
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 3 4 2 Zebrafish (» Fishes) 7 12 3 Drosophila (» Hexapods) 42 55 4 Caenorhabditis elegans (» Nematodes) 10 17 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 52 70 7 Comparative MiP 267 393
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 10 20 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14 3 Amphibians frogs, toads, salamanders 9 13 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 91 121 5 Hexapods insects, springtails; » Drosophila 26 34 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 17 34 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16 8 Molluscs gastropods, cephalopods, bivalves 16 26 9 Nematodes » Caenorhabditis elegans 3 8 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 10 14 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 47 58 12 Plants 26 45 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38 14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34 15 Archaea archaebacteria 0 6
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 125 154 2 Genital 67 91 3 Heart 543 709 4 Kidney 108 135 5 Liver 489 638 6 Lung;Gill 40 53 7 Nervous system 467 559 8 Skeletal muscle 807 998
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 179 224 2 Endothelial;epithelial;mesothelial cell 183 210 3 Fibroblast 156 202 4 Islet cell;pancreas;thymus 39 49 5 Lymphocyte 46 58 6 Platelet 82 96 7 Stem cells 23 34
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 13 2 HEK 63 81 3 HeLa 24 37 4 Neuroblastoma 26 27 5 HUVEC 19 22 6 Macrophage-derived cell lines 20 29 7 Other cells and cell lines 244 284
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 38 107 2 Intact organ 20 31 3 Living cells 792 886 4 Permeabilized cells 461 488 5 Permeabilized tissue 814 890 6 Homogenate 247 279 7 Isolated mitochondria 950 1207 8 SMP Submitochondrial particles 9 21 9 Chloroplasts 1 9 10 Enzyme 38 67 11 Oxidase and biochemical oxidation 36 46
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 20 23 2 Complex I CI 390 471 3 Complex II;succinate dehydrogenase CII 346 414 4 Complex III CIII 261 305 5 Complex IV;cytochrome c oxidase CIV 362 427 6 Complex V;ATP synthase CV 188 226 7 mt-Inner membrane transporter 28 38 8 Marker enzyme 48 69 9 Supercomplex 36 47 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 63 80 11 Uncoupling protein 49 54
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 140 181 2 ATP production 59 91 3 Aerobic glycolysis 39 74 4 Amino acid 7 16 5 Calcium 65 95 6 Coupling efficiency;uncoupling 69 127 7 Cyt c Cytochrome c 37 45 8 Fatty acid FA substrate kinetics 108 129 9 Flux control 44 69 10 Inhibitor Inhibitor kinetics 126 153 11 Ion;substrate transport 46 83 12 mt-Membrane potential Mitochondrial membrane potential
- » Keywords: Force and membrane potential
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
79 127 13 Oxygen kinetics 88 118 14 Q-junction effect 5 6 15 Redox state 44 68 16 Substrate Fuel substrate kinetics 169 220 17 Temperature Temperature dependence 51 74 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 52 67
Coupling control states
# O2k-Publications MitoPedia: Coupling control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2011 2192 2 R 
ROUTINE respiration
Physiological state, living cells 603 660 3 E 
ET-capacity
Maximal noncoupled respiration 1365 1445 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 1617 1735
Pathway control states
# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 417 510 2 N N-pathway control state NADH-linked, level 4 1641 1744 3 S S-pathway control state Succinate-linked, level 3 1102 1170 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 100 116 5 DQ Duorquinol-linked, level 2 14 17 6 CIV Complex IV single step Ascorbate & TMPD, level 1 470 494 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1015 1056 8 Other 121 135 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 910 949
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 807 998 2 O2k-Publications: Human heart 543 709 3 O2k-Publications: Skeletal muscle - human vs mouse 33 41
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 19 26
