O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4282


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (357 entries) 357 500
2 Exercise physiology;nutrition;life style 702 977
3 Comparative MiP;environmental MiP 309 455
4 Pharmacology;toxicology 783 937
5 mt-Biogenesis;mt-density 244 326
6 Genetic knockout;overexpression 583 649
7 Instruments;methods 258 392


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 251 386
2 Alzheimer's 65 89
3 Autism 6 10
4 Cancer 328 437
5 Cardiovascular 182 251
6 COPD 9 12
7 Diabetes 332 434
8 Inherited 61 93
9 Infectious 45 63
10 Myopathy 61 72
11 Neurodegenerative 156 217
12 Obesity 231 373
13 Parkinson's 60 95
14 Sepsis 69 79
15 Other 256 327


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 92 153
2 Cryopreservation 38 61
3 Hypoxia 94 187
4 Ischemia-reperfusion 306 410
5 Oxidative stress;RONS 552 780
6 Permeability transition 71 92
7 Temperature: hypothermia; hyperthermia 90 110


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1338 1910
2 Pig 87 99
3 Horse 26 33
4 Bovines 21 69
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1225 1437
9 Rat 832 1071
10 Guinea pig 23 36
11 Other mammals including only mammals that are not listed as mammalian species above 49 80
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 6
2 Zebrafish Fishes) 11 17
3 Drosophila Hexapods) 60 77
4 Caenorhabditis elegans Nematodes) 22 30
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 59 83
7 Comparative MiP 309 455


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 12 23
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 12 17
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 108 144
5 Hexapods insects, springtails; » Drosophila 32 41
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 39
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 23 40
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 18
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 50 61
12 Plants 32 63
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 37 52
14 Eubacteria true bacteria, cyanobacteria, spirochetes 23 42
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 166 230
2 Genital 87 118
3 Heart 671 870
4 Kidney 133 165
5 Liver 599 776
6 Lung;Gill 53 73
7 Nervous system 560 676
8 Skeletal muscle 1017 1262


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 233 288
2 Endothelial;epithelial;mesothelial cell 240 275
3 Fibroblast 193 252
4 Islet cell;pancreas;thymus 49 61
5 Leukemia 22 25
6 Lymphocyte 55 73
7 Platelets 110 128
8 Stem cells 35 47


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 15
2 HEK 87 107
3 HeLa 35 52
4 Neuroblastoma 39 44
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 35
7 Other cells and cell lines 284 328


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 48 238
2 Intact organ 22 36
3 Living cells 1061 1192
4 Permeabilized cells 651 684
5 Permeabilized tissue 1025 1111
6 Homogenate 335 373
7 Isolated mitochondria 1169 1460
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 2 10
10 Enzyme 39 74
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 25
2 Complex I CI 448 536
3 Complex II;succinate dehydrogenase CII 394 466
4 Complex III CIII 297 346
5 Complex IV;cytochrome c oxidase CIV 402 473
6 Complex V;ATP synthase CV 218 258
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 57 80
9 Supercomplex 44 60
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 80 105
11 Uncoupling protein 59 64


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 147 197
2 ATP production 75 112
3 Aerobic glycolysis 46 90
4 Amino acid 9 19
5 Calcium 99 167
6 Coupling efficiency;uncoupling 81 146
7 Cyt c Cytochrome c 40 53
8 Fatty acid FA substrate kinetics 120 145
9 Flux control 52 83
10 Inhibitor Inhibitor kinetics 127 158
11 Ion;substrate transport 57 104
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


104 158
13 Oxygen kinetics 102 140
14 Q-junction effect 13 55
15 Redox state 50 85
16 Substrate Fuel substrate kinetics 179 231
17 Temperature Temperature dependence 68 93
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 53 68


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2619 2830
2 R ROUTINE ROUTINE respiration Physiological state, living cells 810 892
3 E ET ET capacity Maximal noncoupled respiration 1860 1958
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2330 2474


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 547 645
2 N N-pathway control state NADH-linked, level 4 2233 2371
3 S S-pathway control state Succinate-linked, level 3 1520 1601
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 145 166
5 DQ Duorquinol-linked, level 2 23 27
6 CIV Complex IV single step Ascorbate & TMPD, level 1 628 655
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1405 1457
8 Other 129 145
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1344 1394


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1017 1262
2 O2k-Publications: Human heart 671 870
3 O2k-Publications: Skeletal muscle - human vs mouse 36 45
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4282 4282
2 TIP2k 42 42
3 O2k-Fluorometry 297 302
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


51 55
7 Ca2+ O2k-ISE Module 8 8
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 62 78
9 Theoretical background 13 69
10 Instruments;methods 258 392
11 O2k-Fluorometry - Fluorophores 21 21
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35