From Bioblast
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O2k-Publications: Topics
- Mitochondria and Cell Research
Contents
- 1 Mitochondrial physiology: MiP areas
- 2 Pathological states
- 3 Stress conditions
- 4 Organisms
- 5 Tissues and cells
- 6 Preparations
- 7 Enzymes
- 8 Regulation
- 9 Coupling control states
- 10 Pathway control states
- 11 MiPMap combinations - examples
- 12 O2k-Manuals and protocols and specific instrumental applications
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (326 entries) 326 446 2 Exercise physiology;nutrition;life style 560 742 3 Comparative MiP;environmental MiP 276 404 4 Pharmacology;toxicology 534 623 5 mt-Biogenesis;mt-density 226 292 6 Genetic knockout;overexpression 438 494 7 Instruments;methods 198 296
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 212 317 2 Alzheimer's 55 73 3 Autism 2 3 4 Cancer 264 352 5 Cardiovascular 131 170 6 COPD 8 10 7 Diabetes 258 334 8 Inherited 51 71 9 Infectious 25 30 10 Myopathy 49 58 11 Neurodegenerative 134 181 12 Obesity 168 227 13 Parkinson's 51 77 14 Sepsis 55 64 15 Other 184 245
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 74 131 2 Cryopreservation 32 55 3 Hypoxia 63 91 4 Ischemia-reperfusion 273 373 5 Oxidative stress;RONS 478 675 6 Permeability transition 52 71 7 Temperature: hypothermia; hyperthermia 81 97
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 3 4 2 Zebrafish (» Fishes) 7 12 3 Drosophila (» Hexapods) 46 59 4 Caenorhabditis elegans (» Nematodes) 12 19 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 52 70 7 Comparative MiP 276 404
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 10 20 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14 3 Amphibians frogs, toads, salamanders 9 13 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 92 122 5 Hexapods insects, springtails; » Drosophila 26 34 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 18 35 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16 8 Molluscs gastropods, cephalopods, bivalves 16 26 9 Nematodes » Caenorhabditis elegans 3 8 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 10 14 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 49 60 12 Plants 26 45 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38 14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34 15 Archaea archaebacteria 0 6
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 128 157 2 Genital 70 95 3 Heart 548 715 4 Kidney 108 135 5 Liver 497 648 6 Lung;Gill 40 53 7 Nervous system 471 563 8 Skeletal muscle 822 1015
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 181 226 2 Endothelial;epithelial;mesothelial cell 186 215 3 Fibroblast 157 203 4 Islet cell;pancreas;thymus 39 49 5 Lymphocyte 48 61 6 Platelet 84 99 7 Stem cells 23 34
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 13 2 HEK 64 82 3 HeLa 25 38 4 Neuroblastoma 26 27 5 HUVEC 19 22 6 Macrophage-derived cell lines 21 30 7 Other cells and cell lines 251 291
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 38 107 2 Intact organ 20 31 3 Living cells 807 902 4 Permeabilized cells 468 496 5 Permeabilized tissue 827 903 6 Homogenate 251 283 7 Isolated mitochondria 964 1223 8 SMP Submitochondrial particles 9 21 9 Chloroplasts 1 9 10 Enzyme 38 67 11 Oxidase and biochemical oxidation 36 46
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 20 23 2 Complex I CI 393 475 3 Complex II;succinate dehydrogenase CII 349 417 4 Complex III CIII 264 308 5 Complex IV;cytochrome c oxidase CIV 364 430 6 Complex V;ATP synthase CV 190 228 7 mt-Inner membrane transporter 29 41 8 Marker enzyme 48 69 9 Supercomplex 36 48 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 66 84 11 Uncoupling protein 51 56
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 143 184 2 ATP production 60 92 3 Aerobic glycolysis 39 74 4 Amino acid 7 16 5 Calcium 65 97 6 Coupling efficiency;uncoupling 69 127 7 Cyt c Cytochrome c 37 45 8 Fatty acid FA substrate kinetics 108 129 9 Flux control 44 69 10 Inhibitor Inhibitor kinetics 126 154 11 Ion;substrate transport 47 86 12 mt-Membrane potential Mitochondrial membrane potential
- » Keywords: Force and membrane potential
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
84 132 13 Oxygen kinetics 88 118 14 Q-junction effect 5 6 15 Redox state 44 68 16 Substrate Fuel substrate kinetics 170 221 17 Temperature Temperature dependence 54 77 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 52 67
Coupling control states
# O2k-Publications MitoPedia: Coupling control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2046 2229 2 R 
ROUTINE respiration
Physiological state, living cells 619 676 3 E 
ET-capacity
Maximal noncoupled respiration 1391 1472 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 1672 1792
Pathway control states
# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 421 514 2 N N-pathway control state NADH-linked, level 4 1675 1779 3 S S-pathway control state Succinate-linked, level 3 1133 1202 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 102 118 5 DQ Duorquinol-linked, level 2 14 17 6 CIV Complex IV single step Ascorbate & TMPD, level 1 479 503 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1033 1074 8 Other 121 136 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 933 973
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 822 1015 2 O2k-Publications: Human heart 548 715 3 O2k-Publications: Skeletal muscle - human vs mouse 33 41
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 22 29
