Cookies help us deliver our services. By using our services, you agree to our use of cookies. More information

O2k-Publications: Topics

From Bioblast

                



O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4448


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (357 entries) 357 500
2 Exercise physiology;nutrition;life style 719 995
3 Comparative MiP;environmental MiP 313 463
4 Pharmacology;toxicology 807 964
5 mt-Biogenesis;mt-density 245 327
6 Genetic knockout;overexpression 613 679
7 Instruments;methods 263 398


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 260 395
2 Alzheimer's 68 92
3 Autism 7 11
4 Cancer 336 447
5 Cardiovascular 192 261
6 COPD 9 12
7 Diabetes 339 441
8 Inherited 61 94
9 Infectious 47 65
10 Myopathy 68 79
11 Neurodegenerative 160 222
12 Obesity 241 383
13 Parkinson's 64 100
14 Sepsis 71 81
15 Other 269 341


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 92 154
2 Cryopreservation 38 61
3 Hypoxia 101 196
4 Ischemia-reperfusion 318 422
5 Oxidative stress;RONS 561 794
6 Permeability transition 71 94
7 Temperature: hypothermia; hyperthermia 90 110


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1382 1959
2 Pig 87 99
3 Horse 26 33
4 Bovines 22 73
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1286 1501
9 Rat 850 1091
10 Guinea pig 23 36
11 Other mammals including only mammals that are not listed as mammalian species above 51 82
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 5 7
2 Zebrafish Fishes) 14 20
3 Drosophila Hexapods) 62 79
4 Caenorhabditis elegans Nematodes) 23 31
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 60 84
7 Comparative MiP 313 463


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 13 24
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 110 146
5 Hexapods insects, springtails; » Drosophila 32 41
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 39
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 24 41
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 18
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62
12 Plants 33 65
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 40 57
14 Eubacteria true bacteria, cyanobacteria, spirochetes 24 44
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 177 241
2 Genital 91 122
3 Heart 691 890
4 Kidney 138 170
5 Liver 618 795
6 Lung;Gill 55 75
7 Nervous system 577 695
8 Skeletal muscle 1049 1299


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 235 290
2 Endothelial;epithelial;mesothelial cell 248 283
3 Fibroblast 197 257
4 Islet cell;pancreas;thymus 53 64
5 Leukemia 22 25
6 Lymphocyte 56 74
7 Platelets 117 135
8 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 15
2 HEK 89 110
3 HeLa 36 53
4 Neuroblastoma 42 48
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 35
7 Other cells and cell lines 290 336


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 51 245
2 Intact organ 22 36
3 Living cells 1099 1235
4 Permeabilized cells 680 713
5 Permeabilized tissue 1059 1148
6 Homogenate 353 391
7 Isolated mitochondria 1208 1501
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 3 11
10 Enzyme 39 74
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 26
2 Complex I CI 454 559
3 Complex II;succinate dehydrogenase CII 395 467
4 Complex III CIII 298 353
5 Complex IV;cytochrome c oxidase CIV 402 477
6 Complex V;ATP synthase CV 219 262
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 57 80
9 Supercomplex 45 66
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 106
11 Uncoupling protein 59 64


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 148 200
2 ATP production 78 117
3 Aerobic glycolysis 48 92
4 Amino acid 9 19
5 Calcium 101 172
6 Coupling efficiency;uncoupling 81 156
7 Cyt c Cytochrome c 39 52
8 Fatty acid FA substrate kinetics 120 145
9 Flux control 53 85
10 Inhibitor Inhibitor kinetics 127 159
11 Ion;substrate transport 60 107
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


107 162
13 Oxygen kinetics 103 142
14 Q-junction effect 13 55
15 Redox state 50 85
16 Substrate Fuel substrate kinetics 179 231
17 Temperature Temperature dependence 70 95
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 54 69


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2726 2939
2 R ROUTINE ROUTINE respiration Physiological state, living cells 839 922
3 E ET ET capacity Maximal noncoupled respiration 1944 2042
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2451 2596


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 571 670
2 N N-pathway control state NADH-linked, level 4 2336 2475
3 S S-pathway control state Succinate-linked, level 3 1586 1667
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 150 172
5 DQ Duorquinol-linked, level 2 23 27
6 CIV Complex IV single step Ascorbate & TMPD, level 1 660 687
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1478 1530
8 Other 130 146
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1424 1474


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1049 1299
2 O2k-Publications: Human heart 691 890
3 O2k-Publications: Skeletal muscle - human vs mouse 37 46
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4448 4448
2 TIP2k 42 42
3 O2k-Fluorometry 318 323
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


52 56
7 Ca2+ O2k-ISE Module 8 8
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 62 78
9 Theoretical background 13 69
10 Instruments;methods 263 398
11 O2k-Fluorometry - Fluorophores 21 21
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35