O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 3891


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (354 entries) 354 484
2 Exercise physiology;nutrition;life style 645 891
3 Comparative MiP;environmental MiP 297 434
4 Pharmacology;toxicology 705 841
5 mt-Biogenesis;mt-density 234 308
6 Genetic knockout;overexpression 527 585
7 Instruments;methods 218 323


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 236 362
2 Alzheimer's 62 83
3 Autism 3 7
4 Cancer 306 404
5 Cardiovascular 157 223
6 COPD 8 11
7 Diabetes 307 407
8 Inherited 60 81
9 Infectious 38 51
10 Myopathy 55 66
11 Neurodegenerative 148 203
12 Obesity 211 351
13 Parkinson's 52 83
14 Sepsis 61 71
15 Other 231 299


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 89 146
2 Cryopreservation 34 57
3 Hypoxia 76 108
4 Ischemia-reperfusion 296 398
5 Oxidative stress;RONS 534 741
6 Permeability transition 67 88
7 Temperature: hypothermia; hyperthermia 88 105


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1221 1726
2 Pig 80 92
3 Horse 23 29
4 Bovines 21 63
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 21
8 Mouse 1104 1302
9 Rat 785 1007
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 46 74
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 5
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 53 68
4 Caenorhabditis elegans Nematodes) 19 27
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 55 75
7 Comparative MiP 297 434


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 10 14
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 100 130
5 Hexapods insects, springtails; » Drosophila 31 40
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 19 29
9 Nematodes » Caenorhabditis elegans 4 9
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 27 47
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 31 43
14 Eubacteria true bacteria, cyanobacteria, spirochetes 23 39
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 153 214
2 Genital 82 111
3 Heart 623 804
4 Kidney 125 153
5 Liver 553 711
6 Lung;Gill 49 64
7 Nervous system 520 620
8 Skeletal muscle 935 1150


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 221 271
2 Endothelial;epithelial;mesothelial cell 225 255
3 Fibroblast 172 218
4 Islet cell;pancreas;thymus 45 55
5 Leukemia 22 25
6 Lymphocyte 48 62
7 Platelets 102 120
8 Stem cells 31 41


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 73 91
3 HeLa 30 43
4 Neuroblastoma 33 36
5 HUVEC 19 22
6 Macrophage-derived cell lines 24 33
7 Other cells and cell lines 271 308


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 44 214
2 Intact organ 21 34
3 Living cells 958 1057
4 Permeabilized cells 565 596
5 Permeabilized tissue 951 1035
6 Homogenate 303 338
7 Isolated mitochondria 1096 1368
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 39 68
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 24
2 Complex I CI 430 514
3 Complex II;succinate dehydrogenase CII 381 450
4 Complex III CIII 290 334
5 Complex IV;cytochrome c oxidase CIV 392 459
6 Complex V;ATP synthase CV 211 249
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 50 71
9 Supercomplex 41 54
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 76 96
11 Uncoupling protein 58 63


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 145 190
2 ATP production 71 104
3 Aerobic glycolysis 41 76
4 Amino acid 9 18
5 Calcium 88 133
6 Coupling efficiency;uncoupling 71 132
7 Cyt c Cytochrome c 38 47
8 Fatty acid FA substrate kinetics 116 140
9 Flux control 46 74
10 Inhibitor Inhibitor kinetics 127 155
11 Ion;substrate transport 55 95
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


98 148
13 Oxygen kinetics 97 128
14 Q-junction effect 6 8
15 Redox state 45 70
16 Substrate Fuel substrate kinetics 175 227
17 Temperature Temperature dependence 59 82
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 68


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2378 2574
2 R ROUTINE ROUTINE respiration Physiological state, living cells 724 783
3 E ET ET capacity Maximal noncoupled respiration 1656 1740
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2064 2192


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 496 590
2 N N-pathway control state NADH-linked, level 4 2013 2133
3 S S-pathway control state Succinate-linked, level 3 1349 1420
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 127 145
5 DQ Duorquinol-linked, level 2 17 21
6 CIV Complex IV single step Ascorbate & TMPD, level 1 568 594
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1253 1299
8 Other 125 141
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1164 1206


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 935 1150
2 O2k-Publications: Human heart 623 804
3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3891 3891
2 TIP2k 41 41
3 O2k-Fluorometry 257 263
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


48 52
7 Ca2+ O2k-ISE Module 6 6
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 62 78
9 Theoretical background 12 68
10 Instruments;methods 218 323
11 O2k-Fluorometry - Fluorophores 20 20
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 27 33