Difference between revisions of "Test"
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| entity || [[entity]] || ''X'' || [x] || single countable object; Tab. 4 | | entity || [[entity]] || ''X'' || [x] || single countable object; Tab. 4 | ||
|- | |- | ||
| ET-capacity || | | ET-capacity || [[]] || Example || Example || Example | ||
|- | |- | ||
| ET-excess capacity || | | ET-excess capacity || [[]] || Example || Example || Example | ||
|- | |- | ||
| flow, for O2 || | | flow, for O2 || [[]] || Example || Example || Example | ||
|- | |- | ||
| flux, for O2 || | | flux, for O2 || [[]] || Example || Example || Example | ||
|- | |- | ||
| inorganic phosphate || | | inorganic phosphate || [[]] || Example || Example || Example | ||
|- | |- | ||
| inorganic phosphate carrier || | | inorganic phosphate carrier || [[]] || Example || Example || Example | ||
|- | |- | ||
| isolated mitochondria || | | isolated mitochondria || [[]] || Example || Example || Example | ||
|- | |- | ||
| living cells || | | living cells || [[]] || Example || Example || Example | ||
|- | |- | ||
| LEAK-state || | | LEAK-state || [[]] || Example || Example || Example | ||
|- | |- | ||
| LEAK-respiration || | | LEAK-respiration || [[]] || Example || Example || Example | ||
|- | |- | ||
| mass concentration of sample s || | | mass concentration of sample s || [[]] || Example || Example || Example | ||
|- | |- | ||
| mass format || | | mass format || [[]] || Example || Example || Example | ||
|- | |- | ||
| mass of diluted sample || | | mass of diluted sample || [[]] || Example || Example || Example | ||
|- | |- | ||
| mass per single object || | | mass per single object || [[]] || Example || Example || Example | ||
|- | |- | ||
| mass, dry mass || | | mass, dry mass || [[]] || Example || Example || Example | ||
|- | |- | ||
| mass, wet mass || | | mass, wet mass || [[]] || Example || Example || Example | ||
|- | |- | ||
| MITOCARTA || | | MITOCARTA || [[]] || Example || Example || Example | ||
|- | |- | ||
| MitoPedia || | | MitoPedia || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondria or mitochondrial || | | mitochondria or mitochondrial || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial DNA || | | mitochondrial DNA || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial concentration || | | mitochondrial concentration || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial content || | | mitochondrial content || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial density || | | mitochondrial density || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial elementary marker || | | mitochondrial elementary marker || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial elementary unit || | | mitochondrial elementary unit || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial inner membrane || | | mitochondrial inner membrane || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial outer membrane || | | mitochondrial outer membrane || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial recovery || | | mitochondrial recovery || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial yield || | | mitochondrial yield || [[]] || Example || Example || Example | ||
|- | |- | ||
| molar format || | | molar format || [[]] || Example || Example || Example | ||
|- | |- | ||
| molar mass || | | molar mass || [[]] || Example || Example || Example | ||
|- | |- | ||
| negative || | | negative || [[]] || Example || Example || Example | ||
|- | |- | ||
| count format || | | count format || [[]] || Example || Example || Example | ||
|- | |- | ||
| number of cells || | | number of cells || [[]] || Example || Example || Example | ||
|- | |- | ||
| number of dead cells || | | number of dead cells || [[]] || Example || Example || Example | ||
|- | |- | ||
| number of entities B || | | number of entities B || [[]] || Example || Example || Example | ||
|- | |- | ||
| number of entities X; count || | | number of entities X; count || [[]] || Example || Example || Example | ||
|- | |- | ||
| number of viable cells || | | number of viable cells || [[]] || Example || Example || Example | ||
|- | |- | ||
| organisms || | | organisms || [[]] || Example || Example || Example | ||
|- | |- | ||
| oxidative phosphorylation || | | oxidative phosphorylation || [[]] || Example || Example || Example | ||
|- | |- | ||
| OXPHOS-state || | | OXPHOS-state || [[]] || Example || Example || Example | ||
|- | |- | ||
| OXPHOS-capacity || | | OXPHOS-capacity || [[]] || Example || Example || Example | ||
|- | |- | ||
| oxygen concentration || | | oxygen concentration || [[]] || Example || Example || Example | ||
|- | |- | ||
| oxygen flux, in reaction r || | | oxygen flux, in reaction r || [[]] || Example || Example || Example | ||
|- | |- | ||
| pathway control state || | | pathway control state || [[]] || Example || Example || Example | ||
|- | |- | ||
| permeability transition || | | permeability transition || [[]] || Example || Example || Example | ||
|- | |- | ||
| permeabilized cells || | | permeabilized cells || [[]] || Example || Example || Example | ||
|- | |- | ||
| permeabilized muscle fibers || | | permeabilized muscle fibers || [[]] || Example || Example || Example | ||
|- | |- | ||
| permeabilized tissue || | | permeabilized tissue || [[]] || Example || Example || Example | ||
|- | |- | ||
| phosphorylation of ADP to ATP || | | phosphorylation of ADP to ATP || [[]] || Example || Example || Example | ||
|- | |- | ||
| P»/O2 ratio || | | P»/O2 ratio || [[]] || Example || Example || Example | ||
|- | |- | ||
| positive || | | positive || [[]] || Example || Example || Example | ||
|- | |- | ||
| proton in the negative compartment || | | proton in the negative compartment || [[]] || Example || Example || Example | ||
|- | |- | ||
| proton in the positive compartment || | | proton in the positive compartment || [[]] || Example || Example || Example | ||
|- | |- | ||
| protonmotive force || | | protonmotive force || [[]] || Example || Example || Example | ||
|- | |- | ||
| rate in ET-state || | | rate in ET-state || [[]] || Example || Example || Example | ||
|- | |- | ||
| rate in LEAK-state || | | rate in LEAK-state || [[]] || Example || Example || Example | ||
|- | |- | ||
| rate in OXPHOS-state || | | rate in OXPHOS-state || [[]] || Example || Example || Example | ||
|- | |- | ||
| rate in ROX state || | | rate in ROX state || [[]] || Example || Example || Example | ||
|- | |- | ||
| residual oxygen consumption || | | residual oxygen consumption || [[]] || Example || Example || Example | ||
|- | |- | ||
| respiration || | | respiration || [[]] || Example || Example || Example | ||
|- | |- | ||
| respiratory supercomplex || | | respiratory supercomplex || [[]] || Example || Example || Example | ||
|- | |- | ||
| sample || | | sample || [[]] || Example || Example || Example | ||
|- | |- | ||
| substrate concentration at half-maximal rate || | | substrate concentration at half-maximal rate || [[]] || Example || Example || Example | ||
|- | |- | ||
| substrate-uncoupler-inhibitor-titration || | | substrate-uncoupler-inhibitor-titration || [[]] || Example || Example || Example | ||
|- | |- | ||
| tissue homogenate || | | tissue homogenate || [[]] || Example || Example || Example | ||
|- | |- | ||
| viable cells || | | viable cells || [[]] || Example || Example || Example | ||
|- | |- | ||
| volume of chamber || | | volume of chamber || [[]] || Example || Example || Example | ||
|- | |- | ||
| volume format || | | volume format || [[]] || Example || Example || Example | ||
|- | |- | ||
| volume of sample s || [[volume]] || ''V''s || [L] || Fig. 5; Tab. 5 | | volume of sample s || [[volume]] || ''V''s || [L] || Fig. 5; Tab. 5 |
Revision as of 12:07, 25 May 2020
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Table 8. Terms, symbols, and units. SI base units are used, except for the liter [L = dm3]. SI refers to ref. [11].
Term | Link to MitoPedia term | Symbol | Unit | Links and comments |
---|---|---|---|---|
alternative quinol oxidase] | alternative oxidase | AOX | - | Fig. 1B |
adenosine monophosphate | AMP | AMP | - | 2 ADP ↔ ATP+AMP |
adenosine diphosphate | ADP | ADP | - | Tab. 1; Fig. 1, 2, 5 |
adenosine triphosphate | ATP | ATP | - | Fig. 2, 5 |
adenylates | adenylates | AMP, ADP, ATP | - | Section 2.5.1 |
amount of substance X | amount | nX or n(X) | [mol] | SI |
ATP yield per O2 | ATP yield | YP»/O2 | - | P»/O2 ratio measured in any respiratory state |
catabolic reaction | catabolic reaction | k | - | Fig. 1, 3 |
catabolic rate of respiration | respiration | JkO2; IkO2 | varies | Fig. 1, 3; see flux J and flow I |
cell count | cell count, count | Nce | [x] | Tab. 4; Fig. 5; see number of cells |
cell mass | cell mass | mce | [kg] | Tab. 5; Fig. 5 |
cell mass, mass per cell | cell mass | MNce | [kg∙x-1] | Tab. 5; Fig. 5 |
cell-mass concentration | mass concentration | Cmce | [kg∙L-1] | see Cms: Tab. 4; Cmce = mce∙V-1 |
cell-count concentration | count concentration | Cce | [x∙L-1] | Tab. 4; Cce = Nce∙V-1 |
cell viability index | cell viability | VI | - | VI = Nvce∙Nce-1 = 1 - Ndce∙Nce-1 |
charge number of entity B | charge number | zB | - | Tab. 6; zO2 = 4 [[[Cohen 2008 IUPAC Green Book |24]]] |
Complexes I to IV | Complex I | CI to CIV | - | respiratory ET Complexes are redox proton pumps; Fig. 1B; F1FO-ATPase is not a redox proton pump of the ETS, hence the term CV is not recommended |
concentration of X, count | concentration | CX = NX∙V-1 | [x∙L-1] | Tab. 4 (number concentration [[[Cohen 2008 IUPAC Green Book |24]]]) |
concentration of B, amount | concentration | cB = NB∙V-1 | [mol∙L-1] | SI: amount of substance concentration [[[Cohen 2008 IUPAC Green Book |24]]] |
concentration of O2, amount | concentration | cO2 = nO2∙V-1 | [mol∙L-1] | Box 2; [O2] |
count of X | count | NX | [x] | SI; see number of entities X |
coupling control state | coupling control state | CCS | - | Section 2.4.1 |
dead cells | cell viability | dce | - | Tab. 5 |
electrical format | format | e | [C] | Tab. 6 |
electron transfer, state | electron transfer state | ET | - | Tab. 1; Fig. 2B, 4 (State 3u) |
electron transfer system | electron transfer system | ETS | - | Fig. 2B, 4 (electron transport chain) |
entity | entity | X | [x] | single countable object; Tab. 4 |
ET-capacity | [[]] | Example | Example | Example |
ET-excess capacity | [[]] | Example | Example | Example |
flow, for O2 | [[]] | Example | Example | Example |
flux, for O2 | [[]] | Example | Example | Example |
inorganic phosphate | [[]] | Example | Example | Example |
inorganic phosphate carrier | [[]] | Example | Example | Example |
isolated mitochondria | [[]] | Example | Example | Example |
living cells | [[]] | Example | Example | Example |
LEAK-state | [[]] | Example | Example | Example |
LEAK-respiration | [[]] | Example | Example | Example |
mass concentration of sample s | [[]] | Example | Example | Example |
mass format | [[]] | Example | Example | Example |
mass of diluted sample | [[]] | Example | Example | Example |
mass per single object | [[]] | Example | Example | Example |
mass, dry mass | [[]] | Example | Example | Example |
mass, wet mass | [[]] | Example | Example | Example |
MITOCARTA | [[]] | Example | Example | Example |
MitoPedia | [[]] | Example | Example | Example |
mitochondria or mitochondrial | [[]] | Example | Example | Example |
mitochondrial DNA | [[]] | Example | Example | Example |
mitochondrial concentration | [[]] | Example | Example | Example |
mitochondrial content | [[]] | Example | Example | Example |
mitochondrial density | [[]] | Example | Example | Example |
mitochondrial elementary marker | [[]] | Example | Example | Example |
mitochondrial elementary unit | [[]] | Example | Example | Example |
mitochondrial inner membrane | [[]] | Example | Example | Example |
mitochondrial outer membrane | [[]] | Example | Example | Example |
mitochondrial recovery | [[]] | Example | Example | Example |
mitochondrial yield | [[]] | Example | Example | Example |
molar format | [[]] | Example | Example | Example |
molar mass | [[]] | Example | Example | Example |
negative | [[]] | Example | Example | Example |
count format | [[]] | Example | Example | Example |
number of cells | [[]] | Example | Example | Example |
number of dead cells | [[]] | Example | Example | Example |
number of entities B | [[]] | Example | Example | Example |
number of entities X; count | [[]] | Example | Example | Example |
number of viable cells | [[]] | Example | Example | Example |
organisms | [[]] | Example | Example | Example |
oxidative phosphorylation | [[]] | Example | Example | Example |
OXPHOS-state | [[]] | Example | Example | Example |
OXPHOS-capacity | [[]] | Example | Example | Example |
oxygen concentration | [[]] | Example | Example | Example |
oxygen flux, in reaction r | [[]] | Example | Example | Example |
pathway control state | [[]] | Example | Example | Example |
permeability transition | [[]] | Example | Example | Example |
permeabilized cells | [[]] | Example | Example | Example |
permeabilized muscle fibers | [[]] | Example | Example | Example |
permeabilized tissue | [[]] | Example | Example | Example |
phosphorylation of ADP to ATP | [[]] | Example | Example | Example |
P»/O2 ratio | [[]] | Example | Example | Example |
positive | [[]] | Example | Example | Example |
proton in the negative compartment | [[]] | Example | Example | Example |
proton in the positive compartment | [[]] | Example | Example | Example |
protonmotive force | [[]] | Example | Example | Example |
rate in ET-state | [[]] | Example | Example | Example |
rate in LEAK-state | [[]] | Example | Example | Example |
rate in OXPHOS-state | [[]] | Example | Example | Example |
rate in ROX state | [[]] | Example | Example | Example |
residual oxygen consumption | [[]] | Example | Example | Example |
respiration | [[]] | Example | Example | Example |
respiratory supercomplex | [[]] | Example | Example | Example |
sample | [[]] | Example | Example | Example |
substrate concentration at half-maximal rate | [[]] | Example | Example | Example |
substrate-uncoupler-inhibitor-titration | [[]] | Example | Example | Example |
tissue homogenate | [[]] | Example | Example | Example |
viable cells | [[]] | Example | Example | Example |
volume of chamber | [[]] | Example | Example | Example |
volume format | [[]] | Example | Example | Example |
volume of sample s | volume | Vs | [L] | Fig. 5; Tab. 5 |