Difference between revisions of "O2k-Publications: Topics"
From Bioblast
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__TOC__ | __TOC__ | ||
== | == Mammals and model organisms == | ||
# [[O2k-Publications: Human|Human]] | # [[O2k-Publications: Human|Human]] | ||
# [[O2k-Publications: Pig|Pig]] | # [[O2k-Publications: Pig|Pig]] | ||
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# [[O2k-Publications: Caenorhabditis elegans|Caenorhabditis elegans]] | # [[O2k-Publications: Caenorhabditis elegans|Caenorhabditis elegans]] | ||
# [[O2k-Publications: Saccharomyces cerevisiae|Saccharomyces cerevisiae]] | # [[O2k-Publications: Saccharomyces cerevisiae|Saccharomyces cerevisiae]] | ||
== Taxonomic groups == | == Taxonomic groups == | ||
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# [[O2k-Publications: Archaea|Archaea]] - archaebacteria | # [[O2k-Publications: Archaea|Archaea]] - archaebacteria | ||
== Ecophysiological model organisms == | |||
''Work in progress'' | |||
# [[O2k-Publications: Artemia|Artemia]] | |||
== Tissues and cells == | |||
# [[O2k-Publications: Nervous system|Nervous system]] | |||
# [[O2k-Publications: Heart|Heart]] | |||
# [[O2k-Publications: Skeletal muscle|Skeletal muscle]] | |||
# [[O2k-Publications: Liver|Liver]] | |||
# [[O2k-Publications: Kidney|Kidney]] | |||
# [[O2k-Publications: Lung, Gill|Lung, Gill]] | |||
# [[O2k-Publications: Fat|Fat]] | |||
# [[O2k-Publications: Endothelial; Epithelial; Mesothelial Cell|Endothelial; Epithelial; Mesothelial Cell]] | |||
# [[O2k-Publications: Islet Cell; Pancreas; Thymus|Islet Cell; Pancreas; Thymus]] | |||
# [[O2k-Publications: Blood Cell; Suspension Culture|Blood Cell; Suspension Culture]] | |||
== Model cell lines == | |||
# [[O2k-Publications: CHO|CHO]] | |||
# [[O2k-Publications: HEK|HEK]] | |||
# [[O2k-Publications: HeLa|HeLa]] | |||
# [[O2k-Publications: Neuroblastoma|Neuroblastoma]] | |||
# [[O2k-Publications: Fibroblast|Fibroblast]] | |||
# [[O2k-Publications: HUVEC|HUVEC]] | |||
# [[O2k-Publications: Macrophage-derived cell lines|Macrophage-derived cell lines]] | |||
# [[O2k-Publications: Stem cells|Stem cells]] | |||
# [[O2k-Publications: Other cell lines|Other cell lines]] | |||
== Mitochondrial preparations and intact cells == | |||
# [[O2k-Publications: Isolated Mitochondria|Isolated Mitochondria]] | |||
# [[O2k-Publications: Homogenate|Homogenate]] | |||
# [[O2k-Publications: Permeabilized_tissue|Permeabilized muscle fibres and tissue preparations]] | |||
# [[O2k-Publications: Permeabilized cells|Permeabilized cells]] | |||
# [[O2k-Publications: Intact Cell; Cultured; Primary|Intact cell; Cultured; Primary]] | |||
== Coupling and membrane potential == | == Coupling and membrane potential == | ||
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# [[O2k-Publications: Alzheimer's disease|Alzheimer's disease]] | # [[O2k-Publications: Alzheimer's disease|Alzheimer's disease]] | ||
=== Oxygen kinetics and oxidases === | === Oxygen kinetics and oxidases === | ||
# [[O2k-Publications: Oxygen Kinetics|Oxygen Kinetics]] | # [[O2k-Publications: Oxygen Kinetics|Oxygen Kinetics]] | ||
# [[O2k-Publications: Oxidase; Biochemical Oxidation|Oxidase and Biochemical Oxidation]] | # [[O2k-Publications: Oxidase; Biochemical Oxidation|Oxidase and Biochemical Oxidation]] | ||
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== Specific combinations == | == Specific combinations == | ||
Examples for specific combinations are given for O2k-Publications: | Examples for specific combinations are given for O2k-Publications: | ||
* [[O2k-Publications: Human - Skeletal muscle|O2k-Publications: Human - Skeletal muscle]] | * [[O2k-Publications: Human - Skeletal muscle|O2k-Publications: Human - Skeletal muscle]] | ||
* [[O2k-Publications: Human - Heart|O2k-Publications: Human - Heart]] | * [[O2k-Publications: Human - Heart|O2k-Publications: Human - Heart]] | ||
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=== SUIT protocols === | === SUIT protocols === | ||
* [[OroboPedia: Protocols]] | * [[OroboPedia: Protocols]] | ||
* [[O2k-Publications: Q-Junction Effect|Q-junction effect]] | |||
=== Other === | === Other === | ||
Revision as of 14:45, 5 August 2013
O2k-Publications: Specific topics
Mammals and model organisms
- Human
- Pig
- Horse
- Cat
- Dog
- Rabbit
- Mouse
- Rat
- Guinea pig
- Chicken
- Zebrafish
- Drosophila
- Caenorhabditis elegans
- Saccharomyces cerevisiae
Taxonomic groups
Work in progress
- Mammals: including only mammals that are not listed under human or model organisms.
- Birds - see also Chicken (included)
- Reptiles - turtles, lizards, snakes, crocodiles, alligators
- Amphibians - frogs, toads, salamanders
- Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); see also Zebrafish (included)
- Hexapods - insects, springtails; see also Drosophila (included)
- Crustaceans - crabs, shrimp, barnacles, etc.; see also Artemia (included)
- Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
- Molluscs - gastropods, cephalopods, bivalves
- Nematodes - see also Caenorhabditis elegans (included)
- Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
- Fungi - yeast, molds, mushrooms, etc. see also Saccharomyces cerevisiae (included)
- Plants
- Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
- Eubacteria - true bacteria, cyanobacteria, spirochetes
- Archaea - archaebacteria
Ecophysiological model organisms
Work in progress
Tissues and cells
- Nervous system
- Heart
- Skeletal muscle
- Liver
- Kidney
- Lung, Gill
- Fat
- Endothelial; Epithelial; Mesothelial Cell
- Islet Cell; Pancreas; Thymus
- Blood Cell; Suspension Culture
Model cell lines
- CHO
- HEK
- HeLa
- Neuroblastoma
- Fibroblast
- HUVEC
- Macrophage-derived cell lines
- Stem cells
- Other cell lines
Mitochondrial preparations and intact cells
- Isolated Mitochondria
- Homogenate
- Permeabilized muscle fibres and tissue preparations
- Permeabilized cells
- Intact cell; Cultured; Primary
Coupling and membrane potential
Specific applications
Medical and pharmacological applications
- Hypoxia
- Ischemia-reperfusion injury and preservation
- RONS Oxidative stress
- Apoptosis, cytochrome c release, and cancer
- Mitochondrial Disease; Degenerative Disease and Defect
- Ageing and senescence
- Pharmacology and Biotechnology
- Genetic Defect; Knockdown; Overexpression
Diseases
Oxygen kinetics and oxidases
Ecophysiology and toxicology
Specific combinations
Examples for specific combinations are given for O2k-Publications:
- O2k-Publications: Human - Skeletal muscle
- O2k-Publications: Human - Heart
- O2k-Publications: Human vs. Rat: Nervous system
Instrumental and methodological
O2k-Manual
SUIT protocols
Other
Chronological
Lately added/edited references and authors
- MiPNet28.12 IOC167 Schroecken AT
- MiPNet28.13 IOC164 Innsbruck AT
- Yoshino 2021 Science
- Kim 2023 Nat Commun
- D-A-CH Algen Summit 2024 Bern CH
- Davis 2024 BEC
- Cardoso 2024 MitoFit
- Gnaiger 2009 Int J Biochem Cell Biol
- MitoFit
- Bioenerg Commun
- GRC Mitochondria and Chloroplasts 2024 Barcelona ES
- Mousa 2023 Cell Rep
- Nicholls 2013 Academic Press
- Onsager 1931 Phys Rev
- Krumschnabel 2014 Methods Enzymol
- Ciccone 2024 J Exp Biol
- MiPNet28.11 IOC163 Schroecken AT
- Brown 2021 Metrologia
- Metrologia
- Brown 2018 Metrologia
- Gnaiger 2020 MitoFit x
- Cooper 2012 Synthese
- IOC166 Ljubljana SI
- EMC2024 Ljubljana SI
