Difference between revisions of "O2k-Publications: Topics"
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== Organisms and tissues/cells == | |||
== | |||
== | === Mammals and models === | ||
* [[O2k-Publications: Human|Human]], • [[O2k-Publications: Pig|Pig]], • [[O2k-Publications: Horse|Horse]], • [[O2k-Publications: Cat|Cat]], • [[O2k-Publications: Dog|Dog]], • [[O2k-Publications: Rabbit|Rabbit]], • [[O2k-Publications: Mouse|Mouse]], • [[O2k-Publications: Rat|Rat]], • [[O2k-Publications: Guinea pig|Guinea pig]] | |||
* [[O2k-Publications: Other mammals|Other mammals]]: including only mammals that are '''not listed under mammals and model organisms'''. | |||
* [[O2k-Publications: Chicken|Chicken]] (>> [[O2k-Publications: Birds|Birds]]), • [[O2k-Publications: Zebrafish|Zebrafish]] (>> [[O2k-Publications: Fishes|Fishes]]), • [[O2k-Publications: Drosophila|Drosophila]] (>> [[O2k-Publications: Hexapods|Hexapods]]), • [[O2k-Publications: Caenorhabditis elegans|Caenorhabditis elegans]] (>> [[O2k-Publications: Nematodes|Nematodes]]), • [[O2k-Publications: Saccharomyces cerevisiae|Saccharomyces cerevisiae]] (>> [[O2k-Publications: Fungi|Fungi]]) | |||
* [[O2k-Publications: Artemia|Artemia]] (>> [[O2k-Publications: Crustaceans|Crustaceans]]) | |||
== | === Non-mammals === | ||
* [[O2k-Publications: Birds|Birds]] (>> [[O2k-Publications: Chicken|Chicken]]) | |||
* [[O2k-Publications: Reptiles|Reptiles]] - turtles, lizards, snakes, crocodiles, alligators | |||
* [[O2k-Publications: Amphibians|Amphibians]] - frogs, toads, salamanders | |||
* [[O2k-Publications: Fishes|Fishes]] - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); >> [[O2k-Publications: Zebrafish|Zebrafish]] | |||
* [[O2k-Publications: Hexapods|Hexapods]] - insects, springtails; >> [[O2k-Publications: Drosophila|Drosophila]] | |||
* [[O2k-Publications: Crustaceans|Crustaceans]] - crabs, shrimp, barnacles, etc.; >> [[O2k-Publications: Artemia|Artemia]] | |||
* [[O2k-Publications: Annelids|Annelids]] - polychaetes, e.g. lugworm ''Arenicola marina'', oligochaetes, leeches | |||
* [[O2k-Publications: Molluscs|Molluscs]] - gastropods, cephalopods, bivalves | |||
* [[O2k-Publications: Nematodes|Nematodes]] >> [[O2k-Publications: Caenorhabditis elegans|Caenorhabditis elegans]] | |||
* [[O2k-Publications: Other invertebrates|Other invertebrates]] - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... | |||
* [[O2k-Publications: Fungi|Fungi]] - yeast, molds, mushrooms, etc.; >> [[O2k-Publications: Saccharomyces cerevisiae|Saccharomyces cerevisiae]] | |||
* [[O2k-Publications: Plants|Plants]] | |||
* [[O2k-Publications: Protists|Protists]] - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. | |||
* [[O2k-Publications: Eubacteria|Eubacteria]] - true bacteria, cyanobacteria, spirochetes | |||
* [[O2k-Publications: Archaea|Archaea]] - archaebacteria | |||
== | === Tissues, cell types and cell lines === | ||
* [[O2k-Publications: Heart|Heart]], • [[O2k-Publications: Skeletal muscle|Skeletal muscle]], • [[O2k-Publications: Nervous system|Nervous system]], • [[O2k-Publications: Liver|Liver]], • [[O2k-Publications: Kidney|Kidney]], • [[O2k-Publications: Lung; gill|Lung; gill]], • [[O2k-Publications: Fat|Fat]], • [[O2k-Publications: Endothelial; Epithelial; Mesothelial Cell|Endothelial; Epithelial; Mesothelial Cell]], • [[O2k-Publications: Islet Cell; Pancreas; Thymus|Islet Cell; Pancreas; Thymus]], [[O2k-Publications: Blood cells|Blood cells]] | |||
* [[O2k-Publications: CHO|CHO]], • [[O2k-Publications: HEK|HEK]], • [[O2k-Publications: HeLa|HeLa]], • [[O2k-Publications: Neuroblastoma|Neuroblastoma]], • [[O2k-Publications: Fibroblast|Fibroblast]], • [[O2k-Publications: HUVEC|HUVEC]], • [[O2k-Publications: Macrophage-derived cell lines|Macrophage-derived cell lines]], • [[O2k-Publications: Stem cells|Stem cells]], • [[O2k-Publications: Other cell lines|Other cell lines]] | |||
== Preparations == | == Preparations == | ||
* [[O2k-Publications: Isolated Mitochondria|Isolated mitochondria]], • [[O2k-Publications: Homogenate|Homogenate]], • [[O2k-Publications: Permeabilized_tissue|Permeabilized muscle fibres and tissue preparations]], • [[O2k-Publications: Permeabilized cells|Permeabilized cells]], • [[O2k-Publications: Intact cells|Intact cells]] | |||
* [[O2k-Publications: Oxidase; Biochemical Oxidation|Oxidase and biochemical oxidation]] | |||
== Stress conditions == | == Stress conditions and pathological states == | ||
* [[O2k-Publications: Hypoxia|Hypoxia]], • [[O2k-Publications: Ischemia-Reperfusion Injury and Preservation|Ischemia-reperfusion injury and preservation]], • [[O2k-Publications: RONS;_Oxidative_stress|Oxidative stress;RONS]] | |||
* [[O2k-Publications: Aging;_Senescence|Aging; senescence]], • [[O2k-Publications: Cancer;_Apoptosis;_Cytochrome_c|Cancer]], • [[O2k-Publications: COPD|COPD]], • [[O2k-Publications: Diabetes 2|Diabetes 2]], • [[O2k-Publications: Parkinson's disease|Parkinson's]], • [[O2k-Publications: Alzheimer's disease|Alzheimer's]], • [[O2k-Publications: Mitochondrial diseases and defects|Mitochondrial Disease; Degenerative Disease and Defect]] | |||
== | == Regulation and MiP''areas'' == | ||
* [[O2k-Publications: Coupling; Membrane Potential|Coupling and membrane potential]], • [[O2k-Publications: Temperature|Temperature]], • [[O2k-Publications: Oxygen kinetics|Oxygen kinetics]] | |||
* [[O2k-Publications: Genetic knockout; overexpression|Genetic knockout; overexpression]], • [[O2k-Publications: Ecophysiology; Toxciology|Ecophysiology and Toxicology]], • [[O2k-Publications: Pharmacology;_Biotechnology|Pharmacology and Biotechnology]] | |||
== MiPMap combinations - ''examples'' == | == MiPMap combinations - ''examples'' == | ||
Examples for specific combinations are given for O2k-Publications: | Examples for specific combinations are given for O2k-Publications: | ||
* [[O2k-Publications: Human - Skeletal muscle|O2k-Publications: Human | * [[O2k-Publications: Human - Skeletal muscle|O2k-Publications: Human skeletal muscle]] | ||
* [[O2k-Publications: Human - Heart|O2k-Publications: Human | * [[O2k-Publications: Human - Heart|O2k-Publications: Human heart]] | ||
* [[O2k-Publications: Human vs. Rat: Nervous system|O2k-Publications: Human & Rat: Nervous system]] | * [[O2k-Publications: Human vs. Rat: Nervous system|O2k-Publications: Human & Rat: Nervous system]] | ||
== O2k-Manuals and protocols == | == O2k-Manuals and protocols == | ||
* [[OroboPedia: O2k-Manual]] | * [[OroboPedia: O2k-Manual]], • [[O2k-Publications: Instrumental and Methodological Aspects|Instrumental and Methodological Aspects]], • [[O2k-Publications: Theoretical Background|Theoretical Background]], • [[OroboPedia: Protocols]], [[O2k-Publications: Q-Junction Effect|Q-junction effect]] | ||
Other | Other | ||
* [[O2k-Publications:_Twin-Flow_Respirometry|Twin-Flow Respirometry]] | * [[O2k-Publications:_Twin-Flow_Respirometry|Twin-Flow Respirometry]], • [[O2k-Publications: Separate DatLab Applications|Separate DatLab Applications]] | ||
== Lately added/edited references and authors == | == Lately added/edited references and authors == | ||
Revision as of 12:38, 14 August 2013
O2k-Publications: Specific topics >>> All O2k-Publications: chronological
Organisms and tissues/cells
Mammals and models
- Human, • Pig, • Horse, • Cat, • Dog, • Rabbit, • Mouse, • Rat, • Guinea pig
- Other mammals: including only mammals that are not listed under mammals and model organisms.
- Chicken (>> Birds), • Zebrafish (>> Fishes), • Drosophila (>> Hexapods), • Caenorhabditis elegans (>> Nematodes), • Saccharomyces cerevisiae (>> Fungi)
- Artemia (>> Crustaceans)
Non-mammals
- Birds (>> Chicken)
- Reptiles - turtles, lizards, snakes, crocodiles, alligators
- Amphibians - frogs, toads, salamanders
- Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); >> Zebrafish
- Hexapods - insects, springtails; >> Drosophila
- Crustaceans - crabs, shrimp, barnacles, etc.; >> Artemia
- Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
- Molluscs - gastropods, cephalopods, bivalves
- Nematodes >> Caenorhabditis elegans
- Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
- Fungi - yeast, molds, mushrooms, etc.; >> Saccharomyces cerevisiae
- Plants
- Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
- Eubacteria - true bacteria, cyanobacteria, spirochetes
- Archaea - archaebacteria
Tissues, cell types and cell lines
- Heart, • Skeletal muscle, • Nervous system, • Liver, • Kidney, • Lung; gill, • Fat, • Endothelial; Epithelial; Mesothelial Cell, • Islet Cell; Pancreas; Thymus, Blood cells
- CHO, • HEK, • HeLa, • Neuroblastoma, • Fibroblast, • HUVEC, • Macrophage-derived cell lines, • Stem cells, • Other cell lines
Preparations
- Isolated mitochondria, • Homogenate, • Permeabilized muscle fibres and tissue preparations, • Permeabilized cells, • Intact cells
- Oxidase and biochemical oxidation
Stress conditions and pathological states
- Hypoxia, • Ischemia-reperfusion injury and preservation, • Oxidative stress;RONS
- Aging; senescence, • Cancer, • COPD, • Diabetes 2, • Parkinson's, • Alzheimer's, • Mitochondrial Disease; Degenerative Disease and Defect
Regulation and MiPareas
- Coupling and membrane potential, • Temperature, • Oxygen kinetics
- Genetic knockout; overexpression, • Ecophysiology and Toxicology, • Pharmacology and Biotechnology
MiPMap combinations - examples
Examples for specific combinations are given for O2k-Publications:
- O2k-Publications: Human skeletal muscle
- O2k-Publications: Human heart
- O2k-Publications: Human & Rat: Nervous system
O2k-Manuals and protocols
- OroboPedia: O2k-Manual, • Instrumental and Methodological Aspects, • Theoretical Background, • OroboPedia: Protocols, Q-junction effect
Other
Lately added/edited references and authors
- MiPNet28.12 IOC167 Schroecken AT
- MiPNet28.13 IOC164 Innsbruck AT
- Yoshino 2021 Science
- Kim 2023 Nat Commun
- D-A-CH Algen Summit 2024 Bern CH
- Davis 2024 BEC
- Cardoso 2024 MitoFit
- Gnaiger 2009 Int J Biochem Cell Biol
- MitoFit
- Bioenerg Commun
- GRC Mitochondria and Chloroplasts 2024 Barcelona ES
- Mousa 2023 Cell Rep
- Nicholls 2013 Academic Press
- Onsager 1931 Phys Rev
- Krumschnabel 2014 Methods Enzymol
- Ciccone 2024 J Exp Biol
- MiPNet28.11 IOC163 Schroecken AT
- Brown 2021 Metrologia
- Metrologia
- Brown 2018 Metrologia
- Gnaiger 2020 MitoFit x
- Cooper 2012 Synthese
- IOC166 Ljubljana SI
- EMC2024 Ljubljana SI
