O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and cell research
O2k-Publications: chronological
Publications in the MiPMap


See also » O2k-Publications - chronological: 3260


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (322 entries) 322 441
2 Exercise physiology;nutrition;life style 534 713
3 Comparative MiP;environmental MiP 252 377
4 Pharmacology;toxicology 502 582
5 mt-Biogenesis;mt-density 224 290
6 Genetic knockout;overexpression 404 458
7 Instruments;methods 183 280


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 201 304
2 Alzheimer's 54 72
3 Autism 2 2
4 Cancer 255 337
5 Cardiovascular 129 165
6 COPD 8 10
7 Diabetes 251 323
8 Inherited 51 70
9 Infectious 25 30
10 Myopathy 46 55
11 Neurodegenerative 133 179
12 Obesity 166 224
13 Parkinson's 50 75
14 Sepsis 54 63
15 Other 173 233


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 73 125
2 Cryopreservation 31 55
3 Hypoxia 57 63
4 Ischemia-reperfusion 266 359
5 Oxidative stress;RONS 468 638
6 Permeability transition 51 68
7 Temperature: hypothermia; hyperthermia 80 94


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1008 1386
2 Pig 71 83
3 Horse 21 27
4 Bovines 20 62
5 Cat 2 3
6 Dog 10 27
7 Rabbit 16 20
8 Mouse 898 1082
9 Rat 680 886
10 Guinea pig 17 30
11 Other mammals including only mammals that are not listed as mammalian species above 42 70
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 3 4
2 Zebrafish Fishes) 6 11
3 Drosophila Hexapods) 40 53
4 Caenorhabditis elegans Nematodes) 10 17
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 51 67
7 Comparative MiP 252 377


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 10 20
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 89 119
5 Hexapods insects, springtails; » Drosophila 26 34
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 17 34
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 16 26
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 10 14
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 47 58
12 Plants 24 43
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 25 37
14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 124 153
2 Genital 66 90
3 Heart 533 698
4 Kidney 106 133
5 Liver 478 625
6 Lung;Gill 39 52
7 Nervous system 458 552
8 Skeletal muscle 782 975


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 177 223
2 Endothelial;epithelial;mesothelial cell 180 207
3 Fibroblast 153 197
4 Islet cell;pancreas;thymus 39 49
5 Lymphocyte 46 58
6 Platelet 81 95
7 Stem cells 23 33


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 62 81
3 HeLa 24 36
4 Neuroblastoma 23 24
5 HUVEC 19 22
6 Macrophage-derived cell lines 20 29
7 Other cells and cell lines 229 270


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Intact organism 38 107
2 Intact organ 20 31
3 Intact cells 770 864
4 Permeabilized cells 452 481
5 Permeabilized tissue 784 863
6 Homogenate 238 271
7 Isolated mitochondria 932 1191
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 38 65
11 Oxidase and biochemical oxidation 36 45


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 19 23
2 Complex I CI 376 457
3 Complex II;succinate dehydrogenase CII 336 405
4 Complex III CIII 251 296
5 Complex IV;cytochrome c oxidase CIV 348 414
6 Complex V;ATP synthase CV 179 219
7 Inner mt-membrane transporter 28 38
8 Marker enzyme 48 69
9 Supercomplex 36 47
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 59 77
11 Uncoupling protein 48 54


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 135 176
2 ATP production 57 90
3 Aerobic glycolysis 38 73
4 Amino acid 6 15
5 Calcium 63 93
6 Coupling efficiency;uncoupling 67 125
7 Cyt c Cytochrome c 37 45
8 Fatty acid FA substrate kinetics 106 127
9 Flux control 42 67
10 Inhibitor Inhibitor kinetics 119 146
11 Ion;substrate transport 45 82
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


77 126
13 Oxygen kinetics 83 113
14 Q-junction effect 5 6
15 Redox state 44 68
16 Substrate Fuel substrate kinetics 166 217
17 Temperature Temperature dependence 49 72
18 Threshold;excess capacity 26 29
19 Uncoupler Uncoupler kinetics 49 64


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 1967 2150
2 R ROUTINE ROUTINE respiration Physiological state, intact cells 584 643
3 E ET ET-capacity Maximal noncoupled respiration 1328 1411
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1550 1670


Pathway control states

# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 402 495
2 N N-pathway control state NADH-linked, level 4 1596 1700
3 S S-pathway control state Succinate-linked, level 3 1066 1134
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 94 111
5 DQ Duorquinol-linked, level 2 14 17
6 CIV Complex IV single step Ascorbate & TMPD, level 1 459 485
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 986 1028
8 Other 118 132
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 880 921


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 782 975
2 O2k-Publications: Human heart 533 698
3 O2k-Publications: Skeletal muscle - human vs mouse 30 39
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3260 3260
2 TIP2k 40 40
3 O2k-Fluorometry 172 180
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


5 6
5 Nitric Oxide 5 5
6 TPP+ ISE-Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


43 47
7 Calcium 8 8
8 O2k- Spectrophotometer 9 9
9 O2k-Manual 19 20
8 O2k-Protocol 56 76
9 Theoretical background 10 64
10 Instruments;methods 183 280
11 O2k-Fluorometry - Fluorophores 17 17
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 17 26