O2k-Publications: Topics

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Oroboros Instruments

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O2k-Publications: Topics

Mitochondria and cell research
O2k-Publications: chronological
Publications in the MiPMap


See also » O2k-Publications - chronological: 3187


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (321 entries) 321 438
2 Exercise physiology;nutrition;life style 516 694
3 Comparative MiP;environmental MiP 250 374
4 Pharmacology;toxicology 483 562
5 mt-Biogenesis;mt-density 223 289
6 Genetic knockout;overexpression 394 448
7 Instruments;methods 184 280


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 199 301
2 Alzheimer's 52 70
3 Autism 2 2
4 Cancer 247 328
5 Cardiovascular 122 158
6 COPD 8 10
7 Diabetes 249 320
8 Inherited 50 69
9 Infectious 22 27
10 Myopathy 44 53
11 Neurodegenerative 131 177
12 Obesity 163 221
13 Parkinson's 50 75
14 Sepsis 51 60
15 Other 168 228


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 73 125
2 Cryopreservation 32 55
3 Hypoxia 56 62
4 Ischemia-reperfusion 257 350
5 Oxidative stress;RONS 464 634
6 Permeability transition 51 68
7 Temperature: hypothermia; hyperthermia 78 91


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 984 1358
2 Pig 70 82
3 Horse 21 27
4 Bovines 19 61
5 Cat 2 3
6 Dog 10 27
7 Rabbit 16 20
8 Mouse 878 1062
9 Rat 665 871
10 Guinea pig 17 30
11 Other mammals including only mammals that are not listed as mammalian species above 42 70
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 3 4
2 Zebrafish Fishes) 6 11
3 Drosophila Hexapods) 38 51
4 Caenorhabditis elegans Nematodes) 10 17
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 51 67
7 Comparative MiP 250 374


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 10 20
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 87 117
5 Hexapods insects, springtails; » Drosophila 25 33
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 17 34
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 15 25
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 10 14
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 46 57
12 Plants 24 43
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 22 34
14 Eubacteria true bacteria, cyanobacteria, spirochetes 18 34
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 121 149
2 Genital 65 89
3 Heart 517 682
4 Kidney 106 133
5 Liver 469 615
6 Lung;Gill 37 50
7 Nervous system 450 544
8 Skeletal muscle 765 956


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 174 219
2 Endothelial;epithelial;mesothelial cell 177 204
3 Fibroblast 149 193
4 Islet cell;pancreas;thymus 39 48
5 Lymphocyte 44 56
6 Platelet 78 92
7 Stem cells 23 32


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 59 78
3 HeLa 24 36
4 Neuroblastoma 22 23
5 HUVEC 19 21
6 Macrophage-derived cell lines 20 29
7 Other cells and cell lines 226 266


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Intact organism 38 107
2 Intact organ 20 31
3 Intact cells 752 844
4 Permeabilized cells 433 462
5 Permeabilized tissue 763 842
6 Homogenate 235 268
7 Isolated mitochondria 918 1177
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 38 65
11 Oxidase and biochemical oxidation 36 45


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 18 22
2 Complex I CI 367 447
3 Complex II;succinate dehydrogenase CII 325 394
4 Complex III CIII 246 291
5 Complex IV;cytochrome c oxidase CIV 341 405
6 Complex V;ATP synthase CV 175 215
7 Inner mt-membrane transporter 25 34
8 Marker enzyme 48 69
9 Supercomplex 34 45
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 59 77
11 Uncoupling protein 47 53


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 134 175
2 ATP production 57 90
3 Aerobic glycolysis 38 73
4 Amino acid 6 15
5 Calcium 59 89
6 Coupling efficiency;uncoupling 67 125
7 Cyt c Cytochrome c 37 45
8 Fatty acid FA substrate kinetics 106 127
9 Flux control 42 66
10 Inhibitor Inhibitor kinetics 118 145
11 Ion;substrate transport 41 77
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


77 126
13 Oxygen kinetics 80 110
14 Q-junction effect 5 6
15 Redox state 44 68
16 Substrate Fuel substrate kinetics 166 217
17 Temperature Temperature dependence 49 72
18 Threshold;excess capacity 26 29
19 Uncoupler Uncoupler kinetics 49 64


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 1913 2095
2 R ROUTINE ROUTINE respiration Physiological state, intact cells 570 627
3 E ET ET-capacity Maximal noncoupled respiration 1286 1367
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1493 1610


Pathway control states

# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 392 485
2 N N-pathway control state NADH-linked, level 4 1545 1648
3 S S-pathway control state Succinate-linked, level 3 1035 1101
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 90 107
5 DQ Duorquinol-linked, level 2 14 17
6 CIV Complex IV single step Ascorbate & TMPD, level 1 442 467
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 951 992
8 Other 117 131
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 846 884


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 765 956
2 O2k-Publications: Human heart 517 682
3 O2k-Publications: Skeletal muscle - human vs mouse 29 38
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3187 3187
2 TIP2k 40 40
3 O2k-Fluorometry 170 178
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


5 6
5 Nitric Oxide 5 5
6 TPP+ ISE-Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


42 46
7 Calcium 8 8
8 O2k- Spectrophotometer 9 9
9 O2k-Manual 19 20
8 O2k-Protocol 57 77
9 Theoretical background 10 64
10 Instruments;methods 184 280
11 O2k-Fluorometry - Fluorophores 17 17
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 17 26