O2k-Publications: Topics

From Bioblast
Jump to: navigation, search

OROBOROS INSTRUMENTS

OROBOROS         Products         Support         O2k-Publications         Workshops & Events         O2k-Network         Feedback         Contact



O2k-Publications: Topics

Mitochondria and cell research
O2k-Publications: chronological
Publications in the MiPMap


See also » O2k-Publications - chronological: 2055


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (236 entries) 236 321
2 Exercise physiology;nutrition;life style 290 433
3 Comparative MiP;environmental MiP 175 291
4 Pharmacology;toxicology 212 249
5 mt-Biogenesis;mt-density 161 214
6 Genetic knockout;overexpression 261 301
7 Instruments;methods 145 215


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 128 204
2 Alzheimer's 32 47
3 Autism 0 0
4 Cancer 143 202
5 Cardiovascular 56 83
6 COPD 6 7
7 Diabetes 159 212
8 Inherited 32 46
9 Infectious 8 10
10 Myopathy 22 28
11 Neurodegenerative 83 117
12 Obesity 101 145
13 Parkinson's 35 50
14 Sepsis 36 42
15 Other 98 142


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 58 100
2 Cryopreservation 14 31
3 Hypoxia 0 0
4 Ischemia-reperfusion 205 290
5 Mitochondrial disease 116 163
6 Oxidative stress;RONS 364 504
7 Permeability transition 34 45
8 Temperature: hypothermia; hyperthermia] 39 49


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 617 909
2 Pig 48 59
3 Horse 16 22
4 Bovines 12 50
5 Cat 2 3
6 Dog 7 24
7 Rabbit 11 15
8 Mouse 523 666
9 Rat 461 621
10 Guinea pig 10 23
11 Other mammals including only mammals that are not listed as mammalian species above 30 54
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 2 3
2 Zebrafish Fishes) 3 8
3 Drosophila Hexapods) 28 37
4 Caenorhabditis elegans Nematodes) 6 10
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 37 51
7 Comparative MiP 175 291


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 8 18
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 9 13
3 Amphibians frogs, toads, salamanders 7 10
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 55 83
5 Hexapods insects, springtails; » Drosophila 24 32
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 15 31
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 15
8 Molluscs gastropods, cephalopods, bivalves 11 21
9 Nematodes » Caenorhabditis elegans 3 7
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 9 13
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 38 48
12 Plants 13 30
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 12 21
14 Eubacteria true bacteria, cyanobacteria, spirochetes 11 25
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 69 87
2 Genital 42 56
3 Heart 349 490
4 Kidney 59 81
5 Liver 316 428
6 Lung;Gill 26 39
7 Nervous system 281 357
8 Skeletal muscle 514 680


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 102 134
2 Endothelial;epithelial;mesothelial cell 116 137
3 Fibroblast 97 132
4 Islet cell;pancreas;thymus 26 34
5 Lymphocyte 35 43
6 Platelet 34 40
7 Stem cells 18 21


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 12 12
2 HEK 28 41
3 HeLa 16 25
4 Neuroblastoma 18 19
5 HUVEC 18 20
6 Macrophage-derived cell lines 15 21
7 Other cells and cell lines 157 194


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Intact organism 34 100
2 Intact organ 21 32
3 Intact cells 473 541
4 Permeabilized cells 257 274
5 Permeabilized tissue 519 584
6 Homogenate 138 168
7 Isolated mitochondria 622 845
8 SMP Submitochondrial particles 9 19
9 Chloroplasts 1 9
10 Enzyme 34 58
11 Oxidase and biochemical oxidation 29 32


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 17 20
2 Complex I CI 230 294
3 Complex II;succinate dehydrogenase CII 193 250
4 Complex III CIII 127 163
5 Complex IV;cytochrome c oxidase CIV 205 263
6 Complex V;ATP synthase CV 87 118
7 Inner mt-membrane transporter 21 29
8 Marker enzyme 46 65
9 Supercomplex 25 33
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 44 59
11 Uncoupling protein 32 36


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 114 151
2 ATP production 38 63
3 Aerobic glycolysis 37 69
4 Amino acid 3 9
5 Calcium 35 59
6 Coupling efficiency;uncoupling 60 103
7 Cyt c Cytochrome c 34 42
8 Fatty acid FA substrate kinetics 84 99
9 Flux control 36 47
10 Inhibitor Inhibitor kinetics 88 108
11 Ion;substrate transport 35 60
12 mt-Membrane potential 63 93
13 Oxygen kinetics 79 104
14 Q-junction effect 593
"Q-junction effect" is not in the list of possible values (Aerobic glycolysis, ADP, ATP, ATP production, AMP, Calcium, Coupling efficiency;uncoupling, Cyt c, Flux control, Inhibitor, Ion;substrate transport, mt-Membrane potential, Oxygen kinetics, PCr;Cr, pH, Phosphate, Redox state, Substrate, Temperature, Threshold;excess capacity, Uncoupler, Fatty acid, Amino acid) for this property.
865
"Q-junction effect" is not in the list of possible values (Aerobic glycolysis, ADP, ATP, ATP production, AMP, Calcium, Coupling efficiency;uncoupling, Cyt c, Flux control, Inhibitor, Ion;substrate transport, mt-Membrane potential, Oxygen kinetics, PCr;Cr, pH, Phosphate, Redox state, Substrate, Temperature, Threshold;excess capacity, Uncoupler, Fatty acid, Amino acid) for this property.
15 Redox state 34 53
16 Substrate Fuel substrate kinetics 146 194
17 Temperature Temperature dependence 44 64
18 Threshold;excess capacity 22 25
19 Uncoupler Uncoupler kinetics 38 47


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 1189 1346
2 R ROUTINE ROUTINE respiration Physiological state, intact cells 346 396
3 E ETS Electron transfer system capacity Maximal noncoupled respiration 694 761
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 837 921


Pathway control states

# O2k-Publications MitoPedia: Pathway control states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 199 279
2 N N-pathway control state NADH-linked, level 4 830 910
3 S S-pathway control state Succinate-linked, level 3 616 667
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 47 56
5 DQ Duorquinol-linked, level 2 1 1
6 CIV Complex IV single step Ascorbate & TMPD, level 1 226 242
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 466 492
8 Other 98 104
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 399 420


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 514 680
2 O2k-Publications: Human heart 349 490
3 O2k-Publications: Skeletal muscle - human vs mouse 20 28
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 0 2055
2 TIP2k 37 37
3 O2k-Fluorometry 78 80
4 O2k-pH ISE-Module 4 5
5 Nitric Oxide 8 8
6 TPP + ISE-Module 32 33
7 Calcium 10 10
8 O2k- Spectrophotometer 9 9
9 O2k-Manual 18 20
8 O2k-Protocol 45 63
9 Theoretical background 10 54
10 Instruments;methods 145 215
11 O2k-Fluorometry - Fluorophores 30 30
12 PBI Shredder Homogenate preparation 16 17
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 20
2 Separate DatLab applications 12 19