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Difference between revisions of "Baglivo 2022 MitoFit-QC"

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== References ==
 
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Revision as of 18:05, 10 February 2022

Publications in the MiPMap
Baglivo E et al (2022) Statistical analysis of reproducibility in high-resolution respirometry. MitoFit Preprints (in prep).


Authors (2022) MitoFit Preprints

Abstract:

References

LinkReferenceYearView
Amaral OB, Neves K (2021) Reproducibility: expect less of the scientific paper. Nature 597:329-31. https://doi.org/10.1038/d41586-021-02486-72021PMID: 34526702 Open Access
Brookman B, Mann I, eds (2021) Eurachem guide: selection, use and interpretation of proficiency testing (PT) schemes (3rd ed). Eurachem Available from www.eurachem.org.2021Open Access
Doerrier C, Garcia-Souza LF, Krumschnabel G, Wohlfarter Y, Mészáros AT, Gnaiger E (2018) High-Resolution FluoRespirometry and OXPHOS protocols for human cells, permeabilized fibers from small biopsies of muscle, and isolated mitochondria. Methods Mol Biol 1782:31-70. https://doi.org/10.1007/978-1-4939-7831-1_32018PMID: 29850993 »O2k-brief
O2k-Protocols
Gnaiger E (2001) Bioenergetics at low oxygen: dependence of respiration and phosphorylation on oxygen and adenosine diphosphate supply. https://doi.org/10.1016/S0034-5687(01)00307-32001Bioblast pdf
Respir Physiol 128:277-97. PMID: 11718759
Gnaiger E (2008) Polarographic oxygen sensors, the oxygraph and high-resolution respirometry to assess mitochondrial function. In: Mitochondrial dysfunction in drug-induced toxicity (Dykens JA, Will Y, eds) John Wiley & Sons, Inc, Hoboken, NJ:327-52.2008Bioblast pdf
O2k-Protocols contents
Gnaiger E (2020) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 5th ed. Bioenerg Commun 2020.2. https://doi.org/10.26124/bec:2020-00022020Open Access pdf published online 2020-12-30

Gnaiger E (2021) Bioenergetic cluster analysis – mitochondrial respiratory control in human fibroblasts. MitoFit Preprints 2021.08. https://doi.org/10.26124/mitofit:2021-00082021MitoFit Preprints 2021.08.
MitoFit pdf
Bioenergetic cluster analysis – mitochondrial respiratory control in human fibroblasts
Gnaiger E, Kuznetsov AV, Schneeberger S, Seiler R, Brandacher G, Steurer W, Margreiter R (2000) Mitochondria in the cold. In: Life in the Cold (Heldmaier G, Klingenspor M, eds) Springer, Berlin, Heidelberg:431-42. https://doi.org/10.1007/978-3-662-04162-8_452000Bioblast pdf - Springer link
O2k-Protocols contents
Horan MP, Pichaud N, Ballard JWO (2012) Review: Quantifying mitochondrial dysfunction in complex diseases of aging. J Gerontol A Biol Sci Med Sci 67:1022-35. https://doi.org/10.1093/gerona/glr2632012PMID: 22459622 Open Access
Perry CG, Kane DA, Lanza IR, Neufer PD (2013) Methods for assessing mitochondrial function in diabetes. Diabetes 62:1041-53. https://doi.org/10.2337/db12-12192013PMID: 23520284 Open Access
Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibers from small biopsies of human muscle. Methods Mol Biol 810:25-58. https://doi.org/10.1007/978-1-61779-382-0_32012PMID: 22057559
Bioblast pdf
O2k-Protocols
Schmidt CA, Fisher-Wellman KH, Neufer PD (2021) From OCR and ECAR to energy: perspectives on the design and interpretation of bioenergetics studies. J Biol Chem 207:101140. https://doi.org/10.1016/j.jbc.2021.1011402021PMID: 34461088 Open Access
Yépez VA, Kremer LS, Iuso A, Gusic M, Kopajtich R, Koňaříková E, Nadel A, Wachutka L, Prokisch H, Gagneur J (2018) OCR-Stats: Robust estimation and statistical testing of mitochondrial respiration activities using Seahorse XF Analyzer. https://doi.org/10.1371/journal.pone.01999382018PLOS ONE 13:e0199938. PMID: 29995917 Open Access
Zdrazilova L, Hansikova H, Gnaiger E (2022) Comparable respiratory activity in attached and suspended human fibroblasts. PLoS ONE 17:e0264496. https://doi.org/10.1371/journal.pone.02644962022PMID: 35239701 Open Access
Zhang J, Nuebel E, Wisidagama DR, Setoguchi K, Hong JS, Van Horn CM, Imam SS, Vergnes L, Malone CS, Koehler CM, Teitell MA (2012) Measuring energy metabolism in cultured cells, including human pluripotent stem cells and differentiated cells. https://doi.org/10.1038/nprot.2012.0482012Nat Protoc 7: 1068-85. PMID: 22576106 Open Access
Oroboros
O2k-specifications for respirometry and comprehensive OXPHOS analysis.
2024-03-26Bioblast pdf » Versions
O2k-Manual
O2k Quality Control 1: Polarographic oxygen sensors and accuracy of calibration.
2023-02-06Bioblast pdf  » Versions
O2k-Manual
Service of the polarographic oxygen sensor OroboPOS.
2021-06-23Bioblast pdf »Versions
O2k-Manual
O2k Quality Control 2: Instrumental oxygen background correction and accuracy of oxygen flux.
2023-10-19Bioblast pdf » Versions
O2k-Manual
O2k-Chamber cleaning SOP and Integrated Suction System (ISS).
2023-03-14Bioblast pdf » Versions