Difference between revisions of "O2k-Publications: Topics"
From Bioblast
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See also >>> [[O2k-Publications|<big>All O2k-Publications: Chronological</big>]] | See also >>> [[O2k-Publications|<big>All O2k-Publications: Chronological</big>]] | ||
== Organisms and tissues/cells == Β | == Organisms and tissues/cells == Β | ||
== Oxygraph-2k selected application areas == | |||
* [[O2k-Publications: Mitochondrial medicine|mt-Medicine]], β’ [[O2k-Publications: Exercise physiology;nutrition;life style|Exercise physiology;nutrition;life style]], β’ [[O2k-Publications: Comparative MiP;environmental MiP|Comparative MiP;environmental MiP]], β’ [[O2k-Publications: Pharmacology;toxicology|Pharmacology;toxicology]] | |||
* [[O2k-Publications: mt-Biogenesis;mt-density|mt-Biogenesis;mt-density]], β’ [[O2k-Publications: Genetic knockout; overexpression|Genetic knockout;overexpression ]] | |||
* [[O2k-Publications: Instruments;methods|Instruments;methods]] | |||
=== Mammals and models === | === Mammals and models === | ||
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=== Non-mammals === | === Non-mammals === | ||
* [[O2k-Publications: Comparative MiP;environmental MiP|Comparative MiP]] | |||
* [[O2k-Publications: Birds|Birds]] (>> [[O2k-Publications: Chicken|Chicken]]) | * [[O2k-Publications: Birds|Birds]] (>> [[O2k-Publications: Chicken|Chicken]]) | ||
* [[O2k-Publications: Reptiles|Reptiles]] - turtles, lizards, snakes, crocodiles, alligators | * [[O2k-Publications: Reptiles|Reptiles]] - turtles, lizards, snakes, crocodiles, alligators | ||
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* [[O2k-Publications: Aging;_Senescence|Aging; senescence]], β’ [[O2k-Publications: Cancer;_Apoptosis;_Cytochrome_c|Cancer]], β’ [[O2k-Publications: COPD|COPD]], β’ [[O2k-Publications: Diabetes 2|Diabetes 2]], β’ [[O2k-Publications: Parkinson's disease|Parkinson's]], β’ [[O2k-Publications: Alzheimer's disease|Alzheimer's]], β’ [[O2k-Publications: Mitochondrial diseases and defects|Mitochondrial Disease; Degenerative Disease and Defect]] | * [[O2k-Publications: Aging;_Senescence|Aging; senescence]], β’ [[O2k-Publications: Cancer;_Apoptosis;_Cytochrome_c|Cancer]], β’ [[O2k-Publications: COPD|COPD]], β’ [[O2k-Publications: Diabetes 2|Diabetes 2]], β’ [[O2k-Publications: Parkinson's disease|Parkinson's]], β’ [[O2k-Publications: Alzheimer's disease|Alzheimer's]], β’ [[O2k-Publications: Mitochondrial diseases and defects|Mitochondrial Disease; Degenerative Disease and Defect]] | ||
== Regulation | == Regulation == | ||
* [[O2k-Publications: Coupling; Membrane Potential|Coupling and membrane potential]], β’ [[O2k-Publications: Temperature|Temperature]], β’ [[O2k-Publications: Oxygen kinetics|Oxygen kinetics]] | * [[O2k-Publications: Coupling; Membrane Potential|Coupling and membrane potential]], β’ [[O2k-Publications: Temperature|Temperature]], β’ [[O2k-Publications: Oxygen kinetics|Oxygen kinetics]] | ||
== MiPMap combinations - ''examples'' == | == MiPMap combinations - ''examples'' == |
Revision as of 13:40, 15 August 2013
See also >>> All O2k-Publications: Chronological
Organisms and tissues/cells
Oxygraph-2k selected application areas
- mt-Medicine, β’ Exercise physiology;nutrition;life style, β’ Comparative MiP;environmental MiP, β’ Pharmacology;toxicology
- mt-Biogenesis;mt-density, β’ Genetic knockout;overexpression
- Instruments;methods
Mammals and models
- Human, β’ Pig, β’ Horse, β’ Cat, β’ Dog, β’ Rabbit, β’ Mouse, β’ Rat, β’ Guinea pig
- Other mammals: including only mammals that are not listed under mammals and model organisms.
- Chicken (>> Birds), β’ Zebrafish (>> Fishes), β’ Drosophila (>> Hexapods), β’ Caenorhabditis elegans (>> Nematodes), β’ Saccharomyces cerevisiae (>> Fungi)
- Artemia (>> Crustaceans)
Non-mammals
- Comparative MiP
- Birds (>> Chicken)
- Reptiles - turtles, lizards, snakes, crocodiles, alligators
- Amphibians - frogs, toads, salamanders
- Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); >> Zebrafish
- Hexapods - insects, springtails; >> Drosophila
- Crustaceans - crabs, shrimp, barnacles, etc.; >> Artemia
- Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
- Molluscs - gastropods, cephalopods, bivalves
- Nematodes >> Caenorhabditis elegans
- Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
- Fungi - yeast, molds, mushrooms, etc.; >> Saccharomyces cerevisiae
- Plants
- Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
- Eubacteria - true bacteria, cyanobacteria, spirochetes
- Archaea - archaebacteria
Tissues, cell types and cell lines
- Heart, β’ Skeletal muscle, β’ Nervous system, β’ Liver, β’ Kidney, β’ Lung; gill, β’ Fat, β’ Endothelial; Epithelial; Mesothelial Cell, β’ Islet Cell; Pancreas; Thymus, β’ Blood cells
- CHO, β’ HEK, β’ HeLa, β’ Neuroblastoma, β’ Fibroblast, β’ HUVEC, β’ Macrophage-derived cell lines, β’ Stem cells, β’ Other cell lines
Preparations
- Intact cells, β’ Permeabilized cells, β’ Permeabilized muscle fibres;tissue preparations, β’ Homogenate, β’ Isolated mitochondria, β’ Oxidase and biochemical oxidation
Stress conditions and pathological states
- Hypoxia, β’ Ischemia-reperfusion injury and preservation, β’ Oxidative stress;RONS
- Aging; senescence, β’ Cancer, β’ COPD, β’ Diabetes 2, β’ Parkinson's, β’ Alzheimer's, β’ Mitochondrial Disease; Degenerative Disease and Defect
Regulation
MiPMap combinations - examples
Examples for specific combinations are given for O2k-Publications:
- O2k-Publications: Human skeletal muscle
- O2k-Publications: Human heart
- O2k-Publications: Skeletal muscle - human vs mouse
O2k-Manuals and protocols
- OroboPedia: O2k-Manual, β’ Instrumental and Methodological Aspects, β’ Theoretical Background, β’ OroboPedia: Protocols, Q-junction effect
Lately added/edited references and authors
- MiPNet28.12 IOC167 Schroecken AT
- MiPNet28.13 IOC164 Innsbruck AT
- Yoshino 2021 Science
- Kim 2023 Nat Commun
- D-A-CH Algen Summit 2024 Bern CH
- Davis 2024 BEC
- Cardoso 2024 MitoFit
- Gnaiger 2009 Int J Biochem Cell Biol
- MitoFit
- Bioenerg Commun
- GRC Mitochondria and Chloroplasts 2024 Barcelona ES
- Mousa 2023 Cell Rep
- Nicholls 2013 Academic Press
- Onsager 1931 Phys Rev
- Krumschnabel 2014 Methods Enzymol
- Ciccone 2024 J Exp Biol
- MiPNet28.11 IOC163 Schroecken AT
- Brown 2021 Metrologia
- Metrologia
- Brown 2018 Metrologia
- Gnaiger 2020 MitoFit x
- Cooper 2012 Synthese
- IOC166 Ljubljana SI
- EMC2024 Ljubljana SI