Difference between revisions of "O2k-Publications: Topics"
From Bioblast
| Line 2: | Line 2: | ||
__TOC__ | __TOC__ | ||
See also >>> [[O2k-Publications|<big>All O2k-Publications: Chronological</big>]] | See also >>> [[O2k-Publications|<big>All O2k-Publications: Chronological</big>]] | ||
== Oxygraph-2k selected application areas == | == Oxygraph-2k selected application areas == | ||
| Line 9: | Line 8: | ||
* [[O2k-Publications: Instruments;methods|Instruments;methods]] | * [[O2k-Publications: Instruments;methods|Instruments;methods]] | ||
== Organisms and tissues/cells == | |||
=== Mammals and models === | === Mammals and models === | ||
* [[O2k-Publications: Human|Human]], • [[O2k-Publications: Pig|Pig]], • [[O2k-Publications: Horse|Horse]], • [[O2k-Publications: Cat|Cat]], • [[O2k-Publications: Dog|Dog]], • [[O2k-Publications: Rabbit|Rabbit]], • [[O2k-Publications: Mouse|Mouse]], • [[O2k-Publications: Rat|Rat]], • [[O2k-Publications: Guinea pig|Guinea pig]] | * [[O2k-Publications: Human|Human]], • [[O2k-Publications: Pig|Pig]], • [[O2k-Publications: Horse|Horse]], • [[O2k-Publications: Cat|Cat]], • [[O2k-Publications: Dog|Dog]], • [[O2k-Publications: Rabbit|Rabbit]], • [[O2k-Publications: Mouse|Mouse]], • [[O2k-Publications: Rat|Rat]], • [[O2k-Publications: Guinea pig|Guinea pig]] | ||
| Line 54: | Line 54: | ||
== O2k-Manuals and protocols == | == O2k-Manuals and protocols == | ||
* [[OroboPedia: O2k-Manual]], • [[O2k-Publications: | * [[OroboPedia: O2k-Manual]], • [[O2k-Publications: Instruments;methods|Instruments;methods]], • [[O2k-Publications: Theoretical Background|Theoretical Background]], • [[OroboPedia: Protocols]], [[O2k-Publications: Q-Junction Effect|Q-junction effect]] | ||
* [[O2k-Publications:_Twin-Flow_Respirometry|Twin-Flow Respirometry]], • [[O2k-Publications: Separate DatLab Applications|Separate DatLab Applications]] | * [[O2k-Publications:_Twin-Flow_Respirometry|Twin-Flow Respirometry]], • [[O2k-Publications: Separate DatLab Applications|Separate DatLab Applications]] | ||
Revision as of 14:28, 15 August 2013
See also >>> All O2k-Publications: Chronological
Oxygraph-2k selected application areas
- mt-Medicine, • Exercise physiology;nutrition;life style, • Comparative MiP;environmental MiP, • Pharmacology;toxicology
- mt-Biogenesis;mt-density, • Genetic knockout;overexpression
- Instruments;methods
Organisms and tissues/cells
Mammals and models
- Human, • Pig, • Horse, • Cat, • Dog, • Rabbit, • Mouse, • Rat, • Guinea pig
- Other mammals: including only mammals that are not listed under mammals and model organisms.
- Chicken (>> Birds), • Zebrafish (>> Fishes), • Drosophila (>> Hexapods), • Caenorhabditis elegans (>> Nematodes), • Saccharomyces cerevisiae (>> Fungi)
- Artemia (>> Crustaceans)
Non-mammals
- Comparative MiP
- Birds (>> Chicken)
- Reptiles - turtles, lizards, snakes, crocodiles, alligators
- Amphibians - frogs, toads, salamanders
- Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); >> Zebrafish
- Hexapods - insects, springtails; >> Drosophila
- Crustaceans - crabs, shrimp, barnacles, etc.; >> Artemia
- Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
- Molluscs - gastropods, cephalopods, bivalves
- Nematodes >> Caenorhabditis elegans
- Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
- Fungi - yeast, molds, mushrooms, etc.; >> Saccharomyces cerevisiae
- Plants
- Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
- Eubacteria - true bacteria, cyanobacteria, spirochetes
- Archaea - archaebacteria
Tissues, cell types and cell lines
- Heart, • Skeletal muscle, • Nervous system, • Liver, • Kidney, • Lung; gill, • Fat, • Endothelial; Epithelial; Mesothelial Cell, • Islet Cell; Pancreas; Thymus, • Blood cells
- CHO, • HEK, • HeLa, • Neuroblastoma, • Fibroblast, • HUVEC, • Macrophage-derived cell lines, • Stem cells, • Other cell lines
Preparations
- Intact cells, • Permeabilized cells, • Permeabilized muscle fibres;tissue preparations, • Homogenate, • Isolated mitochondria, • Oxidase and biochemical oxidation
Stress conditions and pathological states
- Hypoxia, • Ischemia-reperfusion injury and preservation, • Oxidative stress;RONS
- Aging; senescence, • Cancer, • COPD, • Diabetes 2, • Parkinson's, • Alzheimer's, • Mitochondrial Disease; Degenerative Disease and Defect
Regulation
MiPMap combinations - examples
Examples for specific combinations are given for O2k-Publications:
- O2k-Publications: Human skeletal muscle
- O2k-Publications: Human heart
- O2k-Publications: Skeletal muscle - human vs mouse
O2k-Manuals and protocols
- OroboPedia: O2k-Manual, • Instruments;methods, • Theoretical Background, • OroboPedia: Protocols, Q-junction effect
Lately added/edited references and authors
- Yoshino 2021 Science
- Kim 2023 Nat Commun
- D-A-CH Algen Summit 2024 Bern CH
- Davis 2024 BEC
- Cardoso 2024 MitoFit
- Gnaiger 2009 Int J Biochem Cell Biol
- MitoFit
- Bioenerg Commun
- GRC Mitochondria and Chloroplasts 2024 Barcelona ES
- Mousa 2023 Cell Rep
- Nicholls 2013 Academic Press
- Onsager 1931 Phys Rev
- Krumschnabel 2014 Methods Enzymol
- Ciccone 2024 J Exp Biol
- MiPNet28.11 IOC163 Schroecken AT
- Brown 2021 Metrologia
- Metrologia
- Brown 2018 Metrologia
- Gnaiger 2020 MitoFit x
- Cooper 2012 Synthese
- IOC166 Ljubljana SI
- EMC2024 Ljubljana SI
- MiPNet28.12 IOC167 Schroecken AT
- The 8th Pharmaceutical Frontier Forum of Acta Pharmaceutica Sinica 2024 Chongqing CN
