O2k-Publications: Topics

See also >>> All O2k-Publications: Chronological

Oxygraph-2k selected fields of application

• mt-Medicine, • Exercise physiology;nutrition;life style, • Comparative MiP;environmental MiP, • Pharmacology;toxicology
• mt-Biogenesis;mt-density, • Genetic knockout;overexpression
• Instruments;methods

Organisms and tissues/cells

Mammals and models

• Human, • Pig, • Horse, • Cat, • Dog, • Rabbit, • Mouse, • Rat, • Guinea pig
• Other mammals: including only mammals that are not listed under mammals and model organisms.
• Chicken (>> Birds), • Zebrafish (>> Fishes), • Drosophila (>> Hexapods), • Caenorhabditis elegans (>> Nematodes), • Saccharomyces cerevisiae (>> Fungi)
• Artemia (>> Crustaceans)

Non-mammals

• Comparative MiP
• Birds (>> Chicken)
• Reptiles - turtles, lizards, snakes, crocodiles, alligators
• Amphibians - frogs, toads, salamanders
• Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); >> Zebrafish
• Hexapods - insects, springtails; >> Drosophila
• Crustaceans - crabs, shrimp, barnacles, etc.; >> Artemia
• Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
• Molluscs - gastropods, cephalopods, bivalves
• Nematodes >> Caenorhabditis elegans
• Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
• Fungi - yeast, molds, mushrooms, etc.; >> Saccharomyces cerevisiae
• Plants
• Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
• Eubacteria - true bacteria, cyanobacteria, spirochetes
• Archaea - archaebacteria

Tissues, cell types and cell lines

• Heart, • Skeletal muscle, • Nervous system, • Liver, • Kidney, • Lung; gill, • Fat, • Endothelial; Epithelial; Mesothelial Cell, • Islet Cell; Pancreas; Thymus, • Blood cells
• CHO, • HEK, • HeLa, • Neuroblastoma, • Fibroblast, • HUVEC, • Macrophage-derived cell lines, • Stem cells, • Other cell lines

Preparations

• Intact cells, • Permeabilized cells, • Permeabilized muscle fibres;tissue preparations, • Homogenate, • Isolated mitochondria, • Oxidase and biochemical oxidation

Stress conditions and pathological states

• Hypoxia, • Ischemia-reperfusion injury and preservation, • Oxidative stress;RONS
• Aging; senescence, • Cancer, • COPD, • Diabetes 2, • Parkinson's, • Alzheimer's, • Mitochondrial Disease; Degenerative Disease and Defect

Regulation

• Coupling and membrane potential, • Temperature, • Oxygen kinetics

MiPMap combinations - examples

Examples for specific combinations are given for O2k-Publications:

• O2k-Publications: Human skeletal muscle
• O2k-Publications: Human heart
• O2k-Publications: Skeletal muscle - human vs mouse

O2k-Manuals and protocols

• OroboPedia: O2k-Manual, • Instruments;methods, • Theoretical Background, • OroboPedia: Protocols, Q-junction effect

• Twin-Flow Respirometry, • Separate DatLab Applications

Lately added/edited references and authors

• Yoshino 2021 Science
• Kim 2023 Nat Commun
• D-A-CH Algen Summit 2024 Bern CH
• Davis 2024 BEC
• Cardoso 2024 MitoFit
• Gnaiger 2009 Int J Biochem Cell Biol
• MitoFit
• Bioenerg Commun
• GRC Mitochondria and Chloroplasts 2024 Barcelona ES
• Mousa 2023 Cell Rep
• Nicholls 2013 Academic Press
• Onsager 1931 Phys Rev
• Krumschnabel 2014 Methods Enzymol
• Ciccone 2024 J Exp Biol
• MiPNet28.11 IOC163 Schroecken AT
• Brown 2021 Metrologia
• Metrologia
• Brown 2018 Metrologia
• Gnaiger 2020 MitoFit x
• Cooper 2012 Synthese
• IOC166 Ljubljana SI
• EMC2024 Ljubljana SI
• MiPNet28.12 IOC167 Schroecken AT
• The 8th Pharmaceutical Frontier Forum of Acta Pharmaceutica Sinica 2024 Chongqing CN

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