Difference between revisions of "O2k-Publications: Topics"
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== Organisms == | == Organisms == | ||
:: '''Mammals | :: '''Mammals''' | ||
* [[O2k-Publications: Human|Human]] | * [[O2k-Publications: Human|Human]] | ||
* [[O2k-Publications: Chicken|Chicken]] | * [[O2k-Publications: Pig|Pig]] | ||
* [[O2k-Publications: Horse|Horse]] | |||
* [[O2k-Publications: Bovines|Bovines]] | |||
* [[O2k-Publications: Cat|Cat]] | |||
* [[O2k-Publications: Dog|Dog]] | |||
* [[O2k-Publications: Rabbit|Rabbit]] | |||
* [[O2k-Publications: Mouse|Mouse]] | |||
* [[O2k-Publications: Rat|Rat]] | |||
* [[O2k-Publications: Guinea pig|Guinea pig]] | |||
* [[O2k-Publications: Other mammals|Other mammals]]: including only mammals that are '''not listed as mammalian species above''''. | |||
:: '''Model organisms''' | |||
* [[O2k-Publications: Chicken|Chicken]] (» [[O2k-Publications: Birds|Birds]]) | |||
* [[O2k-Publications: Zebrafish|Zebrafish]] (» [[O2k-Publications: Fishes|Fishes]]) | |||
* [[O2k-Publications: Drosophila|Drosophila]] (» [[O2k-Publications: Hexapods|Hexapods]]) | |||
* [[O2k-Publications: Caenorhabditis elegans|Caenorhabditis elegans]] (» [[O2k-Publications: Nematodes|Nematodes]]) | |||
* [[O2k-Publications: Artemia|Artemia]] (» [[O2k-Publications: Crustaceans|Crustaceans]]) | |||
* [[O2k-Publications: Saccharomyces cerevisiae|Saccharomyces cerevisiae]] (» [[O2k-Publications: Fungi|Fungi]]) | |||
* [[O2k-Publications: Comparative MiP;environmental MiP|Comparative MiP]] | * [[O2k-Publications: Comparative MiP;environmental MiP|Comparative MiP]] | ||
:: '''Non-mammals''' | :: '''Non-mammals''' | ||
* [[O2k-Publications: | * [[O2k-Publications: Birds|Birds]] (» [[O2k-Publications: Chicken|Chicken]]) | ||
* Amphibians | * [[O2k-Publications: Reptiles|Reptiles]] - turtles, lizards, snakes, crocodiles, alligators | ||
* [[O2k-Publications: Amphibians|Amphibians]] - frogs, toads, salamanders | |||
* [[O2k-Publications: Fishes|Fishes]] - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » [[O2k-Publications: Zebrafish|Zebrafish]] | |||
* [[O2k-Publications: Hexapods|Hexapods]] - insects, springtails; » [[O2k-Publications: Drosophila|Drosophila]] | |||
* [[O2k-Publications: Crustaceans|Crustaceans]] - crabs, shrimp, barnacles, etc.; » [[O2k-Publications: Artemia|Artemia]] | |||
* [[O2k-Publications: Annelids|Annelids]] - polychaetes, e.g. lugworm ''Arenicola marina'', oligochaetes, leeches | |||
* [[O2k-Publications: Molluscs|Molluscs]] - gastropods, cephalopods, bivalves | |||
* [[O2k-Publications: Nematodes|Nematodes]] » [[O2k-Publications: Caenorhabditis elegans|Caenorhabditis elegans]] | |||
* [[O2k-Publications: Other invertebrates|Other invertebrates]] - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... | |||
* [[O2k-Publications: Fungi|Fungi]] - yeast, molds, mushrooms, etc.; » [[O2k-Publications: Saccharomyces cerevisiae|Saccharomyces cerevisiae]] | |||
* [[O2k-Publications: Plants|Plants]] | |||
* [[O2k-Publications: Protists|Protists]] - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. | |||
* [[O2k-Publications: Eubacteria|Eubacteria]] - true bacteria, cyanobacteria, spirochetes | |||
* [[O2k-Publications: Archaea|Archaea]] - archaebacteria | |||
Revision as of 14:47, 9 November 2016
O2k-Publications: Topics
- Mitochondria and cell research
O2k-Publications in the MiPMap: MiParea
- mt-Medicine (363 entries)
- Exercise physiology;nutrition;life style •• Comparative MiP;environmental MiP
- Pharmacology;toxicology
- mt-Biogenesis;mt-density •• Genetic knockout;overexpression
- Instruments;methods
Pathological states
- Alphabetical order
•• Aging;senescence •• Alzheimer's •• Autism •• Cancer •• Cardiovascular •• COPD •• Diabetes •• Inherited •• Infectious •• Myopathy •• Neurodegenerative •• Obesity •• Parkinson's •• Sepsis
Stress conditions
- Alphabetical order
•• Cell death •• Cryopreservation •• Hypoxia •• Ischemia-reperfusion injury and preservation •• Mitochondrial disease;degenerative disease and defect •• Oxidative stress;RONS •• Permeability transition •• Temperature: hypothermia; hyperthermia
Organisms
- Mammals
- Human
- Pig
- Horse
- Bovines
- Cat
- Dog
- Rabbit
- Mouse
- Rat
- Guinea pig
- Other mammals: including only mammals that are not listed as mammalian species above'.
- Model organisms
- Chicken (» Birds)
- Zebrafish (» Fishes)
- Drosophila (» Hexapods)
- Caenorhabditis elegans (» Nematodes)
- Artemia (» Crustaceans)
- Saccharomyces cerevisiae (» Fungi)
- Comparative MiP
- Non-mammals
- Birds (» Chicken)
- Reptiles - turtles, lizards, snakes, crocodiles, alligators
- Amphibians - frogs, toads, salamanders
- Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish
- Hexapods - insects, springtails; » Drosophila
- Crustaceans - crabs, shrimp, barnacles, etc.; » Artemia
- Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
- Molluscs - gastropods, cephalopods, bivalves
- Nematodes » Caenorhabditis elegans
- Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
- Fungi - yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae
- Plants
- Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
- Eubacteria - true bacteria, cyanobacteria, spirochetes
- Archaea - archaebacteria
Tissues and cells
- Tissues - alphabetical order
•• Fat •• Genital •• Heart •• Kidney •• Liver •• Lung;Gill •• Nervous system •• Skeletal muscle
- Cell types - alphabetical order
•• Blood cells •• Endothelial;epithelial;mesothelial cell •• Fibroblast •• Islet cell;pancreas;thymus •• Lymphocyte •• Platelet •• Stem cells
- Cell lines - alphabetical order
•• CHO •• HEK •• HeLa •• Neuroblastoma •• HUVEC •• Macrophage-derived cell lines
Preparations
- Intact organism •• Intact organ •• Intact cells •• Permeabilized cells •• Permeabilized tissue •• Homogenate •• Isolated mitochondria •• SMP •• Chloroplasts •• Enzyme •• Oxidase and biochemical oxidation
Enzymes
- Alphabetical order
•• Adenine nucleotide translocase •• Complex I •• Complex II;succinate dehydrogenase •• Complex III •• Complex IV;cytochrome c oxidase •• Complex V;ATP synthase •• Inner mt-membrane transporter •• Marker enzyme •• Supercomplex •• TCA cycle and matrix dehydrogenases •• Uncoupling protein
Regulation
- Alphabetical order
•• ADP •• ATP production •• Aerobic glycolysis •• Amino acid •• Calcium •• Coupling efficiency;uncoupling •• Cyt c •• Fatty acid •• Flux control •• Inhibitor •• Ion;substrate transport •• mt-Membrane potential •• Oxygen kinetics •• Q-junction effect •• Redox state •• Substrate •• Temperature •• Threshold;excess capacity •• Uncoupler
Coupling control states
•• OXPHOS •• ROUTINE •• ETS •• LEAK
Pathway control states
# O2k-Publications Number MitoPedia: Pathway control states Number Comment 1 F 607 F-pathway control state 751 Fatty acid oxidation, level 5 2 N 2466 N-pathway control state 2614 NADH-linked, level 4 3 S 1679 S-pathway control state 1787 Succinate-linked, level 3 4 Gp 156 Gp-pathway control state 182 Glycerophosphate-linked, level 3 5 DQ 26 DQ-pathway control state 31 Duorquinol-linked, level 2 6 CIV 700 Complex IV single step 728 Ascorbate & TMPD, level 1 7 NS 1573 NS-pathway control state 1629 Convergent CI- and CII-linked electron flow to the Q-junction 8 Other combinations 131 Other combinations-pathway control state 147 9 ROX 1516 Residual oxygen consumption 1568 Residual oxygen consumption
MiPMap combinations - examples
- Examples for specific combinations
- O2k-Publications: Human skeletal muscle •• O2k-Publications: Human heart •• O2k-Publications: Skeletal muscle - human vs mouse
- Browse data