SUIT-003 O2 ce D039: Difference between revisions
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::: '''[[SUIT protocol pattern]]:'''ce1;(ce2Omy);ce3U;ce4Rot;ce5Ama | |||
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SUIT-003 O2 ce D039 has been designed to study the [[coupling control state]] of intact [[microalgal]] cells. The different capacities are tested in the sequence [[OXPHOS]], [[LEAK-respiration]] and [[ET]]. Depending on the species of microalgae studied, the [[oligomycin]] or any other inhibitor of the [[ATP synthase]] or of the [[adenine nucleotide translocase]] might not have an effect and the [[LEAK-respiration]] cannot be achieved. Therefore, it is recommend to test the effect of these inhibitors in preliminary experiments for different species. Also, the inhibitory effect on the [[Electron transfer-pathway|electron transfer system]] has to be studied to avoid an underestimation of the [[ET-capacity]]. This protocol has been optimised specifically for the microalgae species ''Chlamydomonas reinhardtii'' in which oligomycin does not have an effect. | SUIT-003 O2 ce D039 has been designed to study the [[coupling control state]] of intact [[microalgal]] cells. The different capacities are tested in the sequence [[OXPHOS]], [[LEAK-respiration]] and [[ET]]. Depending on the species of microalgae studied, the [[oligomycin]] or any other inhibitor of the [[ATP synthase]] or of the [[adenine nucleotide translocase]] might not have an effect and the [[LEAK-respiration]] cannot be achieved. Therefore, it is recommend to test the effect of these inhibitors in preliminary experiments for different species. Also, the inhibitory effect on the [[Electron transfer-pathway|electron transfer system]] has to be studied to avoid an underestimation of the [[ET-capacity]]. This protocol has been optimised specifically for the microalgae species ''Chlamydomonas reinhardtii'' in which oligomycin does not have an effect. | ||
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ย Communicated by [[Huete-Ortega M]] and [[Gnaiger E]] (last update 2019- | ย Communicated by [[Huete-Ortega M]] and [[Gnaiger E]] (last update 2019-06-12) | ||
{{Template:SUIT-003 O2 ce D039}} | {{Template:SUIT-003 O2 ce D039}} |
Revision as of 15:43, 12 June 2019
Description
Abbreviation: ce
Reference: A: Coupling control in intact cells without oligomycin; ce: non-permeabilized cells -SUIT-003
SUIT number: D039_ce1;(ce2Omy);ce3U;ce4Rot;ce5Ama
O2k-Application: O2
- MitoPedia: SUIT
- SUIT protocol pattern:ce1;(ce2Omy);ce3U;ce4Rot;ce5Ama
SUIT-003 O2 ce D039 has been designed to study the coupling control state of intact microalgal cells. The different capacities are tested in the sequence OXPHOS, LEAK-respiration and ET. Depending on the species of microalgae studied, the oligomycin or any other inhibitor of the ATP synthase or of the adenine nucleotide translocase might not have an effect and the LEAK-respiration cannot be achieved. Therefore, it is recommend to test the effect of these inhibitors in preliminary experiments for different species. Also, the inhibitory effect on the electron transfer system has to be studied to avoid an underestimation of the ET-capacity. This protocol has been optimised specifically for the microalgae species Chlamydomonas reinhardtii in which oligomycin does not have an effect.
Communicated by Huete-Ortega M and Gnaiger E (last update 2019-06-12)
Steps and respiratory states
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M) |
---|---|---|---|---|
ce1 | ROUTINE | ce1
| ||
(ce2Omy) | L(Omy) | ce1;(ce2Omy)
| ||
ce3U | E | ce1;(ce2Omy);ce3U
| ||
ce4Rot | B(Rot) or ROX | ce1;(ce2Omy);ce3U;ce4Rot
| ||
ce5Ama | ROX | ce1;(ce2Omy);ce3U;ce4Rot;ce5Ama
|
- Bioblast links: SUIT protocols - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Coupling control
- Pathway control
- ยป Electron transfer pathway
- ยป Fatty acid oxidation pathway control state, F
- ยป NADH electron transfer-pathway state, N
- ยป Succinate pathway control state, S
- ยป NS-pathway control state, NS
- ยป Glycerophosphate pathway control state, Gp
- ยป Complex IV single step, CIV
- ยป Anaplerotic pathway control state
- Pathway control
- Main fuel substrates
- ยป Glutamate, G
- ยป Glycerophosphate, Gp
- ยป Malate, M
- ยป Octanoylcarnitine, Oct
- ยป Pyruvate, P
- ยป Succinate, S
- Main fuel substrates
- Glossary
Strengths and limitations
- The SUIT-003 O2 ce D039 is a cell coupling control protocol. The total cell count (Nce) is the sum of viable cells (Nvce) and dead cells (Ndce).
- CIV activity can also be measured after the cell viability test module.
- + Reasonable duration of the experiment.
- - Careful washing is required after the experiment to avoid carry-over of inhibitors and uncoupler.
- - Depending on the species of microalgae studied oligomycin or any other inhibitor of the ATP synthase or of the adenine nucleotide translocase might not have an effect and therefore the LEAK-respiration cannot be achieved.
Compare SUIT protocols
References
MitoPedia concepts: SUIT protocol, SUIT A, Find
MitoPedia methods:
Respirometry