SUIT-026 O2 mt D063: Difference between revisions
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|info='''B''' - '''[[SUIT-026]]''' ย | |info='''B''' - '''[[SUIT-026]]''' ย | ||
|application=O2 | |application=O2 | ||
|SUIT number=D063_1S;2Rot;3D;4Ama | |SUIT number=D063_1S;2Rot;3D;3c;4Ama | ||
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::: '''[[MitoPedia: SUIT]]''' - Protocol for the respiratory control of [[SUIT-026 AmR mt D064]] | ::: '''[[MitoPedia: SUIT]]''' - Protocol for the respiratory control of [[SUIT-026 AmR mt D064]] | ||
::: '''[[SUIT protocol pattern]]:'''ย 1S;2Rot;3D;4Ama | ::: '''[[SUIT protocol pattern]]:'''ย 1S;2Rot;3D;3c;4Ama | ||
SUIT-026 O2 mt D063 has been designed to serve as a respiratory control of the [[SUIT-026 AmR mt D064]] to study the [[Reverse_electron_flow_from_CII_to_CI| RET]]-initiated ROS production in [[Mitochondrial preparations| mitochondrial preparations ([[Isolated mitochondria|isolated mitochondria]] and [[Tissue homogenate|tissue homogenate]] and [[Permeabilized cells|permeabilized cells]] which are already permeabilized when they are added to the chamber)]]. The protocol is focused on [[LEAK]] state for the [[S-pathway]] to provide the conditions of high membrane potential and redox power in the Q-junction. Under these conditions, in several samples has been described that a reverse flow of the electrons into the membrane arm and the quinone binding site of the Complex I occurs, promoting the production of ROS. The addition of [[rotenone]] provides excellent control to this mechanism because this compound blocks the point on which the electrons leak from the Complex I. The titration of ADP at saturating concentrations to reach [[OXPHOS]], allows us to harmonize this protocol with [[SUIT-006 O2 mt D022]] for quality control and a full assessment of the coupling control. ย | SUIT-026 O2 mt D063 has been designed to serve as a respiratory control of the [[SUIT-026 AmR mt D064]] to study the [[Reverse_electron_flow_from_CII_to_CI| RET]]-initiated ROS production in [[Mitochondrial preparations| mitochondrial preparations ([[Isolated mitochondria|isolated mitochondria]] and [[Tissue homogenate|tissue homogenate]] and [[Permeabilized cells|permeabilized cells]] which are already permeabilized when they are added to the chamber)]]. The protocol is focused on [[LEAK]] state for the [[S-pathway]] to provide the conditions of high membrane potential and redox power in the Q-junction. Under these conditions, in several samples has been described that a reverse flow of the electrons into the membrane arm and the quinone binding site of the Complex I occurs, promoting the production of ROS. The addition of [[rotenone]] provides excellent control to this mechanism because this compound blocks the point on which the electrons leak from the Complex I. The titration of ADP at saturating concentrations to reach [[OXPHOS]], allows us to harmonize this protocol with [[SUIT-006 O2 mt D022]] for quality control and a full assessment of the coupling control. ย |
Revision as of 13:40, 27 June 2019
Description
Abbreviation: RET (respiratory control) of SUIT-026 AmR mt D064
Reference: B - SUIT-026
SUIT number: D063_1S;2Rot;3D;3c;4Ama
O2k-Application: O2
- MitoPedia: SUIT - Protocol for the respiratory control of SUIT-026 AmR mt D064
- SUIT protocol pattern: 1S;2Rot;3D;3c;4Ama
SUIT-026 O2 mt D063 has been designed to serve as a respiratory control of the SUIT-026 AmR mt D064 to study the RET-initiated ROS production in [[Mitochondrial preparations| mitochondrial preparations (isolated mitochondria and tissue homogenate and permeabilized cells which are already permeabilized when they are added to the chamber)]]. The protocol is focused on LEAK state for the S-pathway to provide the conditions of high membrane potential and redox power in the Q-junction. Under these conditions, in several samples has been described that a reverse flow of the electrons into the membrane arm and the quinone binding site of the Complex I occurs, promoting the production of ROS. The addition of rotenone provides excellent control to this mechanism because this compound blocks the point on which the electrons leak from the Complex I. The titration of ADP at saturating concentrations to reach OXPHOS, allows us to harmonize this protocol with SUIT-006 O2 mt D022 for quality control and a full assessment of the coupling control.
Communicated by Komlodi T, Iglesias-Gonzalez J and Gnaiger E (last update 2019-06-26)
Steps and respiratory states
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M) |
---|---|---|---|---|
1S | SL(n) | S | CII | 1S
|
2Rot | SL(n) | S | CII | 1S;2Rot
|
3D | SP | S | CII | 1S;2Rot;3D
|
3c | SP | S | CII | 1S;2Rot;3D;3c
|
4Ama | ROX | 1S;2Rot;3D;3c;4Ama
|
- Bioblast links: SUIT protocols - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Coupling control
- Pathway control
- ยป Electron transfer pathway
- ยป Fatty acid oxidation pathway control state, F
- ยป NADH electron transfer-pathway state, N
- ยป Succinate pathway control state, S
- ยป NS-pathway control state, NS
- ยป Glycerophosphate pathway control state, Gp
- ยป Complex IV single step, CIV
- ยป Anaplerotic pathway control state
- Pathway control
- Main fuel substrates
- ยป Glutamate, G
- ยป Glycerophosphate, Gp
- ยป Malate, M
- ยป Octanoylcarnitine, Oct
- ยป Pyruvate, P
- ยป Succinate, S
- Main fuel substrates
- Glossary
Strengths and limitations
- The conditions on which RET is observable in isolated mitochondria are not physiological but it has been suggested that corresponds to some pathological states.
- The addition of cytochrome c is recommended for this SUIT protocol.
- This protocol serves as a respiratory control for SUIT-026 AmR mt D064.
- + Rotenone provides an excellent control step for RET owing to its inhibitory effect on RET leading to decreased ROS formation.
- + Short protocol.
- - This protocol does not provide information about all the coupling control states (LEAK, OXPHOS and ET). However, it is possible to create a DLPU by additing an Event&Mark for the uncoupler titration (4U) after ADP (3D) to obtain ET-state.
Compare SUIT protocols
- SUIT-006 O2 mt D022: CCP mtprep for S-pathway.
- SUIT-026 AmR mt D064: Protocol to evaluate the RET production of ROS.
References
MitoPedia concepts: SUIT protocol, SUIT B, Find
MitoPedia methods:
Fluorometry