Difference between revisions of "O2k-Publications: Topics"
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ย | :::: '''ยป '''Please [[impressum|send us]] references on your [[Oroboros O2k]] applications for the list of O2k-Publications, which is updated by [[Bioblast editorial team|Bioblast editors]] and [[Special:CreateAccount|active wiki users]].''' โ Contact: [mailto:mario.plangger@oroboros.at Mario Plangger] | ||
:::: '''ยป [[O2k-Publications alert]] - ยป [[Recent O2k-Publications |Recent O2k-Publications]]''' | :::: '''ยป [[O2k-Publications alert]] - ยป [[Recent O2k-Publications |Recent O2k-Publications]] | ||
:::: '''ยป [[O2k-brief |O2k-briefs]] | |||
:::: [[O2k-Publications|<big>ยป O2k-Publications -ย chronological: {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]] |format=count | :::: [[O2k-Publications|<big>ยป O2k-Publications -ย chronological: {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]] |format=count | ||
}}'''</big>]] | }}'''</big>]] | ||
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| 7 | | 7 | ||
| style="text-align:left"|[[O2k-Publications: | | style="text-align:left"|[[O2k-Publications: Platelets|Platelets]] | ||
| style="text-align:left"| | | style="text-align:left"| | ||
| style="text-align:left"| | | style="text-align:left"| | ||
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== Coupling control | == Coupling-control == | ||
::::{| class="wikitable sortable" style="text-align:center" | ::::{| class="wikitable sortable" style="text-align:center" | ||
! # | ! # | ||
! O2k-Publications | ! O2k-Publications | ||
! MitoPedia: [[Coupling control state]]s | ! MitoPedia: [[Coupling-control state]]s | ||
! Comment | ! Comment | ||
! O2k | ! O2k | ||
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| 3 | | 3 | ||
| [[O2k-Publications: ET |<big>'''''E'''''</big>]] | | [[O2k-Publications: ET |<big>'''''E'''''</big>]] | ||
| style="text-align:left"|[[Image:E.jpg|link=ET | | style="text-align:left"|[[Image:E.jpg|link=ET capacity|ET]] [[ET capacity]] | ||
| style="text-align:left"|Maximal noncoupled respiration | | style="text-align:left"|Maximal noncoupled respiration | ||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Coupling states::ET]] |format=count}} ย | | {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Coupling states::ET]] |format=count}} ย | ||
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== Pathway control | == Pathway control == | ||
::::{| class="wikitable sortable" style="text-align:center" | ::::{| class="wikitable sortable" style="text-align:center" | ||
! # | ! # | ||
! O2k-Publications | ! O2k-Publications | ||
! MitoPedia: [[Electron transfer-pathway state]]s | ! MitoPedia: [[Electron-transfer-pathway state]]s | ||
! Comment | ! Comment | ||
! O2k | ! O2k | ||
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| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Pathways::ROX]] |format=count}} ย | | {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Pathways::ROX]] |format=count}} ย | ||
| {{#ask:[[Category:Publications]][[Pathways::ROX]] |format=count}} ย | | {{#ask:[[Category:Publications]][[Pathways::ROX]] |format=count}} ย | ||
|- | |||
|} | |||
== Additional labels == | |||
::::{| class="wikitable sortable" style="text-align:center" | |||
! # | |||
! O2k-Publications | |||
! MitoPedia: | |||
! Comment | |||
! O2k | |||
! Total | |||
|- | |||
| 1 | |||
| [[O2k-Publications: Amplex UltraRed |AmR''']] | |||
| style="text-align:left"|[[Amplex UltraRed]] | |||
| style="text-align:left"|Extrinsic fluorophore for measurement of hydrogen peroxide production | |||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Additional label::AmR]] |format=count}} | |||
| {{#ask:[[Category:Publications]][[Additional label::AmR]] |format=count}} | |||
|- | |||
| 2 | |||
| [[O2k-Publications: Magnesium Green |MgG]] | |||
| style="text-align:left"|[[Magnesium Green]] | |||
| style="text-align:left"|Extrinsic fluorophore for measurement of ATP production | |||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Additional label::MgG]] |format=count}} | |||
| {{#ask:[[Category:Publications]][[Additional label::MgG]] |format=count}} | |||
|- | |||
| 3 | |||
| [[O2k-Publications: Calcium Green |CaG]] | |||
| style="text-align:left"|[[Calcium Green]] | |||
| style="text-align:left"|Extrinsic fluorophore for measurement of Ca<sup>2+</sup> production | |||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Additional label::CaG]] |format=count}} | |||
| {{#ask:[[Category:Publications]][[Additional label::CaG]] |format=count}} | |||
|- | |||
| 4 | |||
| [[O2k-Publications: PBMCs |PBMCs]] | |||
| style="text-align:left"|[[PBMC|Peripheral blood mononuclear cell (PBMC)]] | |||
| style="text-align:left"| | |||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Additional label::PBMCs]] |format=count}} | |||
| {{#ask:[[Category:Publications]][[Additional label::PBMCs]] |format=count}} | |||
|- | |||
| 5 | |||
| [[O2k-Publications: Photosynthesis |Photosynthesis]] | |||
| style="text-align:left"|[[Photosynthesis]] | |||
| style="text-align:left"| | |||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Additional label::Photosynthesis]] |format=count}} | |||
| {{#ask:[[Category:Publications]][[Additional label::Photosynthesis]] |format=count}} | |||
|- | |||
| 6 | |||
| [[O2k-Publications: Tissue normoxia |Tissue normoxia]] | |||
| style="text-align:left"|[[Normoxia]] | |||
| style="text-align:left"| | |||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Additional label::Tissue normoxia]] |format=count}} | |||
| {{#ask:[[Category:Publications]][[Additional label::Tissue normoxia]] |format=count}} | |||
|- ย | |- ย | ||
|} | |} | ||
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| 6 | | 6 | ||
| style="text-align:left"|[[O2k-Publications:_O2k-TPP%2B_ISE-Module|TPP<sup>+</sup> ISE | | style="text-align:left"|[[O2k-Publications:_O2k-TPP%2B_ISE-Module|TPP<sup>+</sup> O2k-ISE Module]] | ||
| style="text-align:left"|[[Tetraphenylphosphonium]] | | style="text-align:left"|[[Tetraphenylphosphonium]] | ||
| style="text-align:left"|{{Keywords: Force and membrane potential}} | | style="text-align:left"|{{Keywords: Force and membrane potential}} | ||
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|- | |- | ||
| 7 | | 7 | ||
| style="text-align:left"|[[O2k-Publications: | | style="text-align:left"|[[O2k-Publications: Ca2+ O2k-ISE Module|Ca<sup>2+</sup> O2k-ISE Module]] | ||
| style="text-align:left"| | | style="text-align:left"| | ||
| style="text-align:left"| | | style="text-align:left"| | ||
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|- | |- | ||
| 8 | | 8 | ||
| style="text-align:left"|[[O2k-Publications: Spectrophotometer| O2k- Spectrophotometer]] | | style="text-align:left"|[[O2k-Publications: Spectrophotometer| O2k-Spectrophotometer]] | ||
| style="text-align:left"| | | style="text-align:left"| | ||
| style="text-align:left"| | | style="text-align:left"| | ||
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|- ย | |- ย | ||
| 2 | | 2 | ||
| style="text-align:left"|[[O2k-Publications: Separate DatLab Applications|Separate DatLab | | style="text-align:left"|[[O2k-Publications: Separate DatLab Applications|Separate DatLab applications]] | ||
| style="text-align:left"| | | style="text-align:left"| | ||
| style="text-align:left"| | | style="text-align:left"| |
Latest revision as of 14:31, 22 August 2023
O2k-Publications: Topics
- Mitochondria and Cell Research - the Oroboros Ecosystem
- ยป Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. โ Contact: Mario Plangger
- ยป O2k-Publications alert - ยป Recent O2k-Publications
- ยป O2k-briefs
- ยป O2k-Publications - chronological: 4695
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (363 entries) 363 516 2 Exercise physiology;nutrition;life style 755 1049 3 Comparative MiP;environmental MiP 323 475 4 Pharmacology;toxicology 843 1040 5 mt-Biogenesis;mt-density 248 331 6 Genetic knockout;overexpression 652 721 7 Instruments;methods 273 416
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 274 416 2 Alzheimer's 71 94 3 Autism 7 11 4 Cancer 356 514 5 Cardiovascular 207 289 6 COPD 10 13 7 Diabetes 348 466 8 Inherited 64 99 9 Infectious 50 69 10 Myopathy 77 89 11 Neurodegenerative 169 235 12 Obesity 254 421 13 Parkinson's 67 104 14 Sepsis 74 85 15 Other 288 360
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 93 156 2 Cryopreservation 41 67 3 Hypoxia 116 227 4 Ischemia-reperfusion 326 433 5 Oxidative stress;RONS 580 837 6 Permeability transition 71 96 7 Temperature: hypothermia; hyperthermia 91 112
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (ยป Birds) 5 7 2 Zebrafish (ยป Fishes) 15 22 3 Drosophila (ยป Hexapods) 65 91 4 Caenorhabditis elegans (ยป Nematodes) 24 33 5 Artemia (ยป Crustaceans) 12 19 6 Saccharomyces cerevisiae (ยป Fungi) 61 88 7 Comparative MiP 323 475
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (ยป Chicken) 15 27 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); ยป Zebrafish 116 153 5 Hexapods insects, springtails; ยป Drosophila 34 43 6 Crustaceans crabs, shrimp, barnacles, etc.; ยป Artemia 19 40 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20 8 Molluscs gastropods, cephalopods, bivalves 25 42 9 Nematodes ยป Caenorhabditis elegans 5 11 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21 11 Fungi yeast, molds, mushrooms, etc.; ยป Saccharomyces cerevisiae 52 63 12 Plants 28 57 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 42 59 14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 51 15 Archaea archaebacteria 0 7
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 187 262 2 Genital 92 123 3 Heart 723 935 4 Kidney 150 183 5 Liver 644 839 6 Lung;Gill 59 82 7 Nervous system 606 732 8 Skeletal muscle 1102 1366
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 254 320 2 Endothelial;epithelial;mesothelial cell 258 293 3 Fibroblast 206 270 4 Islet cell;pancreas;thymus 54 66 5 Leukemia 22 25 6 Lymphocyte 58 76 7 Platelets 121 151 8 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 14 16 2 HEK 95 116 3 HeLa 38 55 4 Neuroblastoma 42 49 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 37 7 Other cells and cell lines 292 338
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 53 248 2 Intact organ 23 38 3 Living cells 1161 1310 4 Permeabilized cells 714 752 5 Permeabilized tissue 1112 1206 6 Homogenate 374 418 7 Isolated mitochondria 1259 1566 8 SMP Submitochondrial particles 10 28 9 Chloroplasts 2 10 10 Enzyme 39 102 11 Oxidase and biochemical oxidation 39 49
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 21 27 2 Complex I CI 460 606 3 Complex II;succinate dehydrogenase CII 410 637 4 Complex III CIII 300 362 5 Complex IV;cytochrome c oxidase CIV 405 496 6 Complex V;ATP synthase CV 219 266 7 mt-Inner membrane transporter 31 44 8 Marker enzyme 58 84 9 Supercomplex 48 77 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 108 11 Uncoupling protein 60 66
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 152 207 2 ATP production 78 123 3 Aerobic glycolysis 49 94 4 Amino acid 9 20 5 Calcium 106 179 6 Coupling efficiency;uncoupling 82 162 7 Cyt c Cytochrome c 42 56 8 Fatty acid FA substrate kinetics 127 159 9 Flux control 54 86 10 Inhibitor Inhibitor kinetics 131 169 11 Ion;substrate transport 64 115 12 mt-Membrane potential Mitochondrial membrane potential
- Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Fundamental relationships
- ยป Force
- ยป Affinity
- ยป Flux
- ยป Advancement
- ยป Advancement per volume
- ยป Stoichiometric number
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- ยป Uncoupler
- O2k-Potentiometry
- ยป O2k-Catalogue: O2k-TPP+ ISE-Module
- ยป O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- ยป TPP - O2k-Procedures: Tetraphenylphosphonium
- ยป Specifications: MiPNet15.08 TPP electrode
- ยป Poster
- ยป Unspecific binding of TPP+
- ยป TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- ยป O2k-Catalogue: O2k-FluoRespirometer
- ยป O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- ยป Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- ยป TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
116 179 13 Oxygen kinetics 106 147 14 Q-junction effect 13 56 15 Redox state 58 98 16 Substrate Fuel substrate kinetics 181 236 17 Temperature Temperature dependence 73 100 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 55 70
Coupling-control
# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total 1 P OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2857 3085 2 R ROUTINE respiration Physiological state, living cells 892 979 3 E ET capacity Maximal noncoupled respiration 2060 2170 4 L LEAK respiration Resting state, non-phosphorylating respiration 2602 2760
Pathway control
# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 607 751 2 N N-pathway control state NADH-linked, level 4 2466 2614 3 S S-pathway control state Succinate-linked, level 3 1679 1787 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 156 182 5 DQ Duorquinol-linked, level 2 26 31 6 CIV Complex IV single step Ascorbate & TMPD, level 1 700 728 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1573 1629 8 Other 131 147 9 ROX Residual oxygen consumption includes non-mitochondrial respiration 1516 1568
Additional labels
# O2k-Publications MitoPedia: Comment O2k Total 1 AmR Amplex UltraRed Extrinsic fluorophore for measurement of hydrogen peroxide production 227 232 2 MgG Magnesium Green Extrinsic fluorophore for measurement of ATP production 18 19 3 CaG Calcium Green Extrinsic fluorophore for measurement of Ca2+ production 8 9 4 PBMCs Peripheral blood mononuclear cell (PBMC) 50 55 5 Photosynthesis Photosynthesis 3 52 6 Tissue normoxia Normoxia 17 27
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 1102 1366 2 O2k-Publications: Human heart 723 935 3 O2k-Publications: Skeletal muscle - human vs mouse 39 48
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 29 35