Test
From Bioblast
Table 8. Terms, symbols, and units. SI base units are used, except for the liter [L = dm3]. SI refers to ref. [11].
Term | Link to MitoPedia term | Symbol | Unit | Links and comments |
---|---|---|---|---|
alternative quinol oxidase] | alternative oxidase | AOX | - | Fig. 1B |
adenosine monophosphate | AMP | AMP | - | 2 ADP โ ATP+AMP |
adenosine diphosphate | ADP | ADP | - | Tab. 1; Fig. 1, 2, 5 |
adenosine triphosphate | ATP | ATP | - | Fig. 2, 5 |
adenylates | adenylates | AMP, ADP, ATP | - | Section 2.5.1 |
amount of substance X | amount | nX or n(X) | [mol] | SI |
ATP yield per O2 | ATP yield | YPยป/O2 | - | Pยป/O2 ratio measured in any respiratory state |
catabolic reaction | catabolic reaction | k | - | Fig. 1, 3 |
catabolic rate of respiration | respiration | JkO2; IkO2 | varies | Fig. 1, 3; see flux J and flow I |
cell count | cell count, count | Nce | [x] | Tab. 4; Fig. 5; see number of cells |
cell mass | cell mass | mce | [kg] | Tab. 5; Fig. 5 |
cell mass, mass per cell | cell mass | MNce | [kgโxยญ-1] | Tab. 5; Fig. 5 |
cell-mass concentration | mass concentration | Cmce | [kgโLยญ-1] | see Cms: Tab. 4; Cmce = mceโV-1 |
cell-count concentration | count concentration | Cce | [xโLยญ-1] | Tab. 4; Cce = NceโV-1 |
cell viability index | cell viability | VI | - | VI = NvceโNceยญ-1 = 1 - NdceโNceยญ-1 |
charge number of entity B | charge number | zB | - | Tab. 6; zO2 = 4 [[[Cohen 2008 IUPAC Green Book |24]]] |
Complexes I to IV | Complex I | CI to CIV | - | respiratory ET Complexes are redox proton pumps; Fig. 1B; F1FO-ATPase is not a redox proton pump of the ETS, hence the term CV is not recommended |
concentration of X, count | concentration | CX = NXโVยญ-1 | [xโL-1] | Tab. 4 (number concentration [[[Cohen 2008 IUPAC Green Book |24]]]) |
concentration of B, amount | concentration | cB = NBโVยญ-1 | [molโLยญ-1] | SI: amount of substance concentration [[[Cohen 2008 IUPAC Green Book |24]]] |
concentration of O2, amount | concentration | cO2 = nO2โVยญ-1 | [molโLยญ-1] | Box 2; [O2] |
count format | format | N | [x] | Tab. 4, 5; Fig. 5 |
count of X | count | NX | [x] | SI; see number of entities X |
coupling control state | coupling control state | CCS | - | Section 2.4.1 |
dead cells | cell viability | dce | - | Tab. 5 |
electrical format | format | e | [C] | Tab. 6 |
electron transfer, state | electron transfer state | ET | - | Tab. 1; Fig. 2B, 4 (State 3u) |
electron transfer system | electron transfer system | ETS | - | Fig. 2B, 4 (electron transport chain) |
entity | entity | X | [x] | single countable object; Tab. 4 |
ET-capacity | ET-capacity | E | varies | rate; Tab. 1; Fig. 2 |
ET-excess capacity | ET-excess capacity | E-P | varies | Fig. 2 |
flow, for O2 | flow | IO2 | [molโs-ยญ1] | system-related extensive quantity; Fig. 5 |
flux, for O2 | flux | JO2 | varies | size-specific quantity; Fig. 5 |
inorganic phosphate | inorganic phosphate | Pi | - | Fig. 1C |
inorganic phosphate carrier | inorganic phosphate carrier | PiC | - | Fig. 1C |
isolated mitochondria | isolated mitochondria | imt | - | Tab. 5 |
living cells | living cells | ce | - | Tab. 5 (intact cells) |
LEAK-state | LEAK-state | LEAK | - | Tab. 1; Fig. 2 (compare State 4) |
LEAK-respiration | LEAK-respiration | L | varies | rate; Tab. 1; Fig. 2 |
mass concentration of sample s | concentration | Cms | [kgโL-1] | Tab. 4 |
mass format | format | m | [kg] | Tab. 4 |
mass of diluted sample | mass | ms | [kg] | SI: mass of pure sample mS |
mass per single object | mass | MNX | [kgโxยญ1] | Fig. 5; Tab. 4; SI: m(X); compare molar mass M(X) |
mass, dry mass | mass | md | [kg] | Fig. 5 (dry weight) |
mass, wet mass | mass | mw | [kg] | Fig. 5 (wet weight) |
MITOCARTA | MITOCARTA | |||
MitoPedia | MitoPedia | |||
mitochondria or mitochondrial | mitochondria | mt | - | Box 1 |
mitochondrial DNA | mitochondrial DNA | mtDNA | - | Box 1 |
mitochondrial concentration | concentration | CmtE = mtEโV-1 | [mtEUโL-1] | Tab. 4 |
mitochondrial content | mitochondrial content | mtENX | [mtEUโxยญ-1] | mtENX = mtEโNX-1; Tab. 4 |
mitochondrial density | density | DmtE=mtEโms-1 | Example | Example |
mitochondrial elementary marker | mitochondrial elementary marker | Example | Example | Example |
mitochondrial elementary unit | mitochondrial elementary unit | Example | Example | Example |
mitochondrial inner membrane | mitochondrial inner membrane | Example | Example | Example |
mitochondrial outer membrane | mitochondrial outer membrane | Example | Example | Example |
mitochondrial recovery | mitochondrial recovery | Example | Example | Example |
mitochondrial yield | mitochondrial yield | Example | Example | Example |
molar format | format | n | Example | Example |
molar mass | molar mass | Example | Example | Example |
negative | negative | Example | Example | Example |
number of cells | number | Example | Example | Example |
number of dead cells | cell viability | Example | Example | Example |
number of entities B | number | Example | Example | Example |
number of entities X; count | number | Example | Example | Example |
number of viable cells | viability | Example | Example | Example |
organisms | organism | Example | Example | Example |
oxidative phosphorylation | oxidative phosphorylation | Example | Example | Example |
OXPHOS-state | OXPHOS-state | Example | Example | Example |
OXPHOS-capacity | OXPHOS-capacity | Example | Example | Example |
oxygen concentration | concentration | Example | Example | Example |
oxygen flux, in reaction r | oxygen flux | Example | Example | Example |
pathway control state | pathway control state | Example | Example | Example |
permeability transition | permeability transition | Example | Example | Example |
permeabilized cells | permeabilized cells | Example | Example | Example |
permeabilized muscle fibers | permeabilized muscle fibers | Example | Example | Example |
permeabilized tissue | permeabilized tissue | Example | Example | Example |
phosphorylation of ADP to ATP | phosphorylation | Example | Example | Example |
Pยป/O2 ratio | phosphorylation | Example | Example | Example |
positive | positive | Example | Example | Example |
proton in the negative compartment | proton in the negative compartment | Example | Example | Example |
proton in the positive compartment | proton in the positive compartment | Example | Example | Example |
protonmotive force | protonmotive force | Example | Example | Example |
rate in ET-state | ET | Example | Example | Example |
rate in LEAK-state | LEAK | Example | Example | Example |
rate in OXPHOS-state | OXPHOS | Example | Example | Example |
rate in ROX state | residual oxygen consumption | Example | Example | Example |
residual oxygen consumption | residual oxygen consumption | Example | Example | Example |
respiration | respiration | Example | Example | Example |
respiratory supercomplex | supercomplex | Example | Example | Example |
sample | sample | Example | Example | Example |
substrate concentration at half-maximal rate | substrate concentration at half-maximal rate | Example | Example | Example |
substrate-uncoupler-inhibitor-titration | substrate-uncoupler-inhibitor-titration | Example | Example | Example |
tissue homogenate | tissue homogenate | Example | Example | Example |
viable cells | viable cells | Example | Example | Example |
volume of chamber | volume | Example | Example | Example |
volume format | format | Example | Example | Example |
volume of sample s | volume | Vs | [L] | Fig. 5; Tab. 5 |
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