Difference between revisions of "Test"
From Bioblast
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| entity || [[entity]] || ''X'' || [x] || single countable object; Tab. 4 | | entity || [[entity]] || ''X'' || [x] || single countable object; Tab. 4 | ||
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| ET-capacity || [[]] || Example || Example || Example | | ET-capacity || [[ET-capacity]] || Example || Example || Example | ||
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| ET-excess capacity || [[]] || Example || Example || Example | | ET-excess capacity || [[ET-excess capacity]] || Example || Example || Example | ||
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| flow, for O2 || [[]] || Example || Example || Example | | flow, for O2 || [[flow]] || Example || Example || Example | ||
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| flux, for O2 || [[]] || Example || Example || Example | | flux, for O2 || [[flux]] || Example || Example || Example | ||
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| inorganic phosphate || [[]] || Example || Example || Example | | inorganic phosphate || [[inorganic phosphate]] || Example || Example || Example | ||
|- | |- | ||
| inorganic phosphate carrier || [[]] || Example || Example || Example | | inorganic phosphate carrier || [[inorganic phosphate carrier]] || Example || Example || Example | ||
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| isolated mitochondria || [[]] || Example || Example || Example | | isolated mitochondria || [[isolated mitochondria]] || Example || Example || Example | ||
|- | |- | ||
| living cells || [[]] || Example || Example || Example | | living cells || [[living cells]] || Example || Example || Example | ||
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| LEAK-state || [[]] || Example || Example || Example | | LEAK-state || [[LEAK-state]] || Example || Example || Example | ||
|- | |- | ||
| LEAK-respiration || [[]] || Example || Example || Example | | LEAK-respiration || [[LEAK-respiration]] || Example || Example || Example | ||
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| mass concentration of sample s || [[]] || Example || Example || Example | | mass concentration of sample s || [[concentration]] || Example || Example || Example | ||
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| mass format || [[]] || Example || Example || Example | | mass format || [[format]] || Example || Example || Example | ||
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| mass of diluted sample || [[]] || Example || Example || Example | | mass of diluted sample || [[mass]] || Example || Example || Example | ||
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| mass per single object || [[]] || Example || Example || Example | | mass per single object || [[mass]] || Example || Example || Example | ||
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| mass, dry mass || [[]] || Example || Example || Example | | mass, dry mass || [[mass]] || Example || Example || Example | ||
|- | |- | ||
| mass, wet mass || [[]] || Example || Example || Example | | mass, wet mass || [[mass]] || Example || Example || Example | ||
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| MITOCARTA || [[]] || Example || Example || Example | | MITOCARTA || [[MITOCARTA]] || Example || Example || Example | ||
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| MitoPedia || [[]] || Example || Example || Example | | MitoPedia || [[MitoPedia]] || Example || Example || Example | ||
|- | |- | ||
| mitochondria or mitochondrial || [[]] || Example || Example || Example | | mitochondria or mitochondrial || [[mitochondria]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial DNA || [[]] || Example || Example || Example | | mitochondrial DNA || [[mitochondrial DNA]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial concentration || [[]] || Example || Example || Example | | mitochondrial concentration || [[concentration]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial content || [[]] || Example || Example || Example | | mitochondrial content || [[mitochondrial content]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial density || [[]] || Example || Example || Example | | mitochondrial density || [[density]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial elementary marker || [[]] || Example || Example || Example | | mitochondrial elementary marker || [[]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial elementary unit || [[]] || Example || Example || Example | | mitochondrial elementary unit || [[mitochondrial elementary unit]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial inner membrane || [[]] || Example || Example || Example | | mitochondrial inner membrane || [[mitochondrial inner membrane]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial outer membrane || [[]] || Example || Example || Example | | mitochondrial outer membrane || [[mitochondrial outer membrane]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial recovery || [[]] || Example || Example || Example | | mitochondrial recovery || [[mitochondrial recovery]] || Example || Example || Example | ||
|- | |- | ||
| mitochondrial yield || [[]] || Example || Example || Example | | mitochondrial yield || [[mitochondrial yield]] || Example || Example || Example | ||
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| molar format || [[]] || Example || Example || Example | | molar format || [[format]] || Example || Example || Example | ||
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| molar mass || [[]] || Example || Example || Example | | molar mass || [[molar mass]] || Example || Example || Example | ||
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| negative || [[]] || Example || Example || Example | | negative || [[negative]] || Example || Example || Example | ||
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| count format || [[]] || Example || Example || Example | | count format || [[format]] || Example || Example || Example | ||
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| number of cells || [[]] || Example || Example || Example | | number of cells || [[number]] || Example || Example || Example | ||
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| number of dead cells || [[]] || Example || Example || Example | | number of dead cells || [[cell viability]] || Example || Example || Example | ||
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| number of entities B || [[]] || Example || Example || Example | | number of entities B || [[number]] || Example || Example || Example | ||
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| number of entities X; count || [[]] || Example || Example || Example | | number of entities X; count || [[number]] || Example || Example || Example | ||
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| number of viable cells || [[]] || Example || Example || Example | | number of viable cells || [[viability]] || Example || Example || Example | ||
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| organisms || [[]] || Example || Example || Example | | organisms || [[organism]] || Example || Example || Example | ||
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| oxidative phosphorylation || [[]] || Example || Example || Example | | oxidative phosphorylation || [[oxidative phosphorylation]] || Example || Example || Example | ||
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| OXPHOS-state || [[]] || Example || Example || Example | | OXPHOS-state || [[OXPHOS-state]] || Example || Example || Example | ||
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| OXPHOS-capacity || [[]] || Example || Example || Example | | OXPHOS-capacity || [[OXPHOS-capacity]] || Example || Example || Example | ||
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| oxygen concentration || [[]] || Example || Example || Example | | oxygen concentration || [[concentration]] || Example || Example || Example | ||
|- | |- | ||
| oxygen flux, in reaction r || [[]] || Example || Example || Example | | oxygen flux, in reaction r || [[oxygen flux]] || Example || Example || Example | ||
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| pathway control state || [[]] || Example || Example || Example | | pathway control state || [[pathway control state]] || Example || Example || Example | ||
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| permeability transition || [[]] || Example || Example || Example | | permeability transition || [[permeability transition]] || Example || Example || Example | ||
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| permeabilized cells || [[]] || Example || Example || Example | | permeabilized cells || [[permeabilized cells]] || Example || Example || Example | ||
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| permeabilized muscle fibers || [[]] || Example || Example || Example | | permeabilized muscle fibers || [[permeabilized muscle fibers]] || Example || Example || Example | ||
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| permeabilized tissue || [[]] || Example || Example || Example | | permeabilized tissue || [[permeabilized tissue]] || Example || Example || Example | ||
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| phosphorylation of ADP to ATP || [[]] || Example || Example || Example | | phosphorylation of ADP to ATP || [[phosphorylation]] || Example || Example || Example | ||
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| P»/O2 ratio || [[]] || Example || Example || Example | | P»/O2 ratio || [[phosphorylation]] || Example || Example || Example | ||
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| positive || [[]] || Example || Example || Example | | positive || [[positive]] || Example || Example || Example | ||
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| proton in the negative compartment || [[]] || Example || Example || Example | | proton in the negative compartment || [[proton in the negative compartment]] || Example || Example || Example | ||
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| proton in the positive compartment || [[]] || Example || Example || Example | | proton in the positive compartment || [[proton in the positive compartment]] || Example || Example || Example | ||
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| protonmotive force || [[]] || Example || Example || Example | | protonmotive force || [[protonmotive force]] || Example || Example || Example | ||
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| rate in ET-state || [[]] || Example || Example || Example | | rate in ET-state || [[ET]] || Example || Example || Example | ||
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| rate in LEAK-state || [[]] || Example || Example || Example | | rate in LEAK-state || [[LEAK]] || Example || Example || Example | ||
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| rate in OXPHOS-state || [[]] || Example || Example || Example | | rate in OXPHOS-state || [[OXPHOS]] || Example || Example || Example | ||
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| rate in ROX state || [[]] || Example || Example || Example | | rate in ROX state || [[residual oxygen consumption]] || Example || Example || Example | ||
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| residual oxygen consumption || [[]] || Example || Example || Example | | residual oxygen consumption || [[residual oxygen consumption]] || Example || Example || Example | ||
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| respiration || [[]] || Example || Example || Example | | respiration || [[respiration]] || Example || Example || Example | ||
|- | |- | ||
| respiratory supercomplex || [[]] || Example || Example || Example | | respiratory supercomplex || [[supercomplex]] || Example || Example || Example | ||
|- | |- | ||
| sample || [[]] || Example || Example || Example | | sample || [[sample]] || Example || Example || Example | ||
|- | |- | ||
| substrate concentration at half-maximal rate || [[]] || Example || Example || Example | | substrate concentration at half-maximal rate || [[substrate concentration at half-maximal rate]] || Example || Example || Example | ||
|- | |- | ||
| substrate-uncoupler-inhibitor-titration || [[]] || Example || Example || Example | | substrate-uncoupler-inhibitor-titration || [[substrate-uncoupler-inhibitor-titration]] || Example || Example || Example | ||
|- | |- | ||
| tissue homogenate || [[]] || Example || Example || Example | | tissue homogenate || [[tissue homogenate]] || Example || Example || Example | ||
|- | |- | ||
| viable cells || [[]] || Example || Example || Example | | viable cells || [[viable cells]] || Example || Example || Example | ||
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| volume of chamber || [[]] || Example || Example || Example | | volume of chamber || [[volume]] || Example || Example || Example | ||
|- | |- | ||
| volume format || [[]] || Example || Example || Example | | volume format || [[format]] || Example || Example || Example | ||
|- | |- | ||
| volume of sample s || [[volume]] || ''V''s || [L] || Fig. 5; Tab. 5 | | volume of sample s || [[volume]] || ''V''s || [L] || Fig. 5; Tab. 5 |
Revision as of 12:18, 25 May 2020
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Table 8. Terms, symbols, and units. SI base units are used, except for the liter [L = dm3]. SI refers to ref. [11].
Term | Link to MitoPedia term | Symbol | Unit | Links and comments |
---|---|---|---|---|
alternative quinol oxidase] | alternative oxidase | AOX | - | Fig. 1B |
adenosine monophosphate | AMP | AMP | - | 2 ADP ↔ ATP+AMP |
adenosine diphosphate | ADP | ADP | - | Tab. 1; Fig. 1, 2, 5 |
adenosine triphosphate | ATP | ATP | - | Fig. 2, 5 |
adenylates | adenylates | AMP, ADP, ATP | - | Section 2.5.1 |
amount of substance X | amount | nX or n(X) | [mol] | SI |
ATP yield per O2 | ATP yield | YP»/O2 | - | P»/O2 ratio measured in any respiratory state |
catabolic reaction | catabolic reaction | k | - | Fig. 1, 3 |
catabolic rate of respiration | respiration | JkO2; IkO2 | varies | Fig. 1, 3; see flux J and flow I |
cell count | cell count, count | Nce | [x] | Tab. 4; Fig. 5; see number of cells |
cell mass | cell mass | mce | [kg] | Tab. 5; Fig. 5 |
cell mass, mass per cell | cell mass | MNce | [kg∙x-1] | Tab. 5; Fig. 5 |
cell-mass concentration | mass concentration | Cmce | [kg∙L-1] | see Cms: Tab. 4; Cmce = mce∙V-1 |
cell-count concentration | count concentration | Cce | [x∙L-1] | Tab. 4; Cce = Nce∙V-1 |
cell viability index | cell viability | VI | - | VI = Nvce∙Nce-1 = 1 - Ndce∙Nce-1 |
charge number of entity B | charge number | zB | - | Tab. 6; zO2 = 4 [[[Cohen 2008 IUPAC Green Book |24]]] |
Complexes I to IV | Complex I | CI to CIV | - | respiratory ET Complexes are redox proton pumps; Fig. 1B; F1FO-ATPase is not a redox proton pump of the ETS, hence the term CV is not recommended |
concentration of X, count | concentration | CX = NX∙V-1 | [x∙L-1] | Tab. 4 (number concentration [[[Cohen 2008 IUPAC Green Book |24]]]) |
concentration of B, amount | concentration | cB = NB∙V-1 | [mol∙L-1] | SI: amount of substance concentration [[[Cohen 2008 IUPAC Green Book |24]]] |
concentration of O2, amount | concentration | cO2 = nO2∙V-1 | [mol∙L-1] | Box 2; [O2] |
count of X | count | NX | [x] | SI; see number of entities X |
coupling control state | coupling control state | CCS | - | Section 2.4.1 |
dead cells | cell viability | dce | - | Tab. 5 |
electrical format | format | e | [C] | Tab. 6 |
electron transfer, state | electron transfer state | ET | - | Tab. 1; Fig. 2B, 4 (State 3u) |
electron transfer system | electron transfer system | ETS | - | Fig. 2B, 4 (electron transport chain) |
entity | entity | X | [x] | single countable object; Tab. 4 |
ET-capacity | ET-capacity | Example | Example | Example |
ET-excess capacity | ET-excess capacity | Example | Example | Example |
flow, for O2 | flow | Example | Example | Example |
flux, for O2 | flux | Example | Example | Example |
inorganic phosphate | inorganic phosphate | Example | Example | Example |
inorganic phosphate carrier | inorganic phosphate carrier | Example | Example | Example |
isolated mitochondria | isolated mitochondria | Example | Example | Example |
living cells | living cells | Example | Example | Example |
LEAK-state | LEAK-state | Example | Example | Example |
LEAK-respiration | LEAK-respiration | Example | Example | Example |
mass concentration of sample s | concentration | Example | Example | Example |
mass format | format | Example | Example | Example |
mass of diluted sample | mass | Example | Example | Example |
mass per single object | mass | Example | Example | Example |
mass, dry mass | mass | Example | Example | Example |
mass, wet mass | mass | Example | Example | Example |
MITOCARTA | MITOCARTA | Example | Example | Example |
MitoPedia | MitoPedia | Example | Example | Example |
mitochondria or mitochondrial | mitochondria | Example | Example | Example |
mitochondrial DNA | mitochondrial DNA | Example | Example | Example |
mitochondrial concentration | concentration | Example | Example | Example |
mitochondrial content | mitochondrial content | Example | Example | Example |
mitochondrial density | density | Example | Example | Example |
mitochondrial elementary marker | [[]] | Example | Example | Example |
mitochondrial elementary unit | mitochondrial elementary unit | Example | Example | Example |
mitochondrial inner membrane | mitochondrial inner membrane | Example | Example | Example |
mitochondrial outer membrane | mitochondrial outer membrane | Example | Example | Example |
mitochondrial recovery | mitochondrial recovery | Example | Example | Example |
mitochondrial yield | mitochondrial yield | Example | Example | Example |
molar format | format | Example | Example | Example |
molar mass | molar mass | Example | Example | Example |
negative | negative | Example | Example | Example |
count format | format | Example | Example | Example |
number of cells | number | Example | Example | Example |
number of dead cells | cell viability | Example | Example | Example |
number of entities B | number | Example | Example | Example |
number of entities X; count | number | Example | Example | Example |
number of viable cells | viability | Example | Example | Example |
organisms | organism | Example | Example | Example |
oxidative phosphorylation | oxidative phosphorylation | Example | Example | Example |
OXPHOS-state | OXPHOS-state | Example | Example | Example |
OXPHOS-capacity | OXPHOS-capacity | Example | Example | Example |
oxygen concentration | concentration | Example | Example | Example |
oxygen flux, in reaction r | oxygen flux | Example | Example | Example |
pathway control state | pathway control state | Example | Example | Example |
permeability transition | permeability transition | Example | Example | Example |
permeabilized cells | permeabilized cells | Example | Example | Example |
permeabilized muscle fibers | permeabilized muscle fibers | Example | Example | Example |
permeabilized tissue | permeabilized tissue | Example | Example | Example |
phosphorylation of ADP to ATP | phosphorylation | Example | Example | Example |
P»/O2 ratio | phosphorylation | Example | Example | Example |
positive | positive | Example | Example | Example |
proton in the negative compartment | proton in the negative compartment | Example | Example | Example |
proton in the positive compartment | proton in the positive compartment | Example | Example | Example |
protonmotive force | protonmotive force | Example | Example | Example |
rate in ET-state | ET | Example | Example | Example |
rate in LEAK-state | LEAK | Example | Example | Example |
rate in OXPHOS-state | OXPHOS | Example | Example | Example |
rate in ROX state | residual oxygen consumption | Example | Example | Example |
residual oxygen consumption | residual oxygen consumption | Example | Example | Example |
respiration | respiration | Example | Example | Example |
respiratory supercomplex | supercomplex | Example | Example | Example |
sample | sample | Example | Example | Example |
substrate concentration at half-maximal rate | substrate concentration at half-maximal rate | Example | Example | Example |
substrate-uncoupler-inhibitor-titration | substrate-uncoupler-inhibitor-titration | Example | Example | Example |
tissue homogenate | tissue homogenate | Example | Example | Example |
viable cells | viable cells | Example | Example | Example |
volume of chamber | volume | Example | Example | Example |
volume format | format | Example | Example | Example |
volume of sample s | volume | Vs | [L] | Fig. 5; Tab. 5 |