Test

Table 8. Terms, symbols, and units. SI base units are used, except for the liter [L = dm³]. SI refers to ref. [11].

Term	Link to MitoPedia term	Symbol	Unit	Links and comments
alternative quinol oxidase]	alternative oxidase	AOX	-	Fig. 1B
adenosine monophosphate	AMP	AMP	-	2 ADP ↔ ATP+AMP
adenosine diphosphate	ADP	ADP	-	Tab. 1; Fig. 1, 2, 5
adenosine triphosphate	ATP	ATP	-	Fig. 2, 5
adenylates	adenylates	AMP, ADP, ATP	-	Section 2.5.1
amount of substance X	amount	nX or n(X)	[mol]	SI
ATP yield per O2	ATP yield	YP»/O2	-	P»/O2 ratio measured in any respiratory state
catabolic reaction	catabolic reaction	k	-	Fig. 1, 3
catabolic rate of respiration	respiration	JkO2; IkO2	varies	Fig. 1, 3; see flux J and flow I
cell count	cell count, count	Nce	[x]	Tab. 4; Fig. 5; see number of cells
cell mass	cell mass	mce	[kg]	Tab. 5; Fig. 5
cell mass, mass per cell	cell mass	MNce	[kg∙x­-1]	Tab. 5; Fig. 5
cell-mass concentration	mass concentration	Cmce	[kg∙L­-1]	see Cms: Tab. 4; Cmce = mce∙V-1
cell-count concentration	count concentration	Cce	[x∙L­-1]	Tab. 4; Cce = Nce∙V-1
cell viability index	cell viability	VI	-	VI = Nvce∙Nce­-1 = 1 - Ndce∙Nce­-1
charge number of entity B	charge number	zB	-	Tab. 6; zO2 = 4 [[[Cohen 2008 IUPAC Green Book |24]]]
Complexes I to IV	Complex I	CI to CIV	-	respiratory ET Complexes are redox proton pumps; Fig. 1B; F1FO-ATPase is not a redox proton pump of the ETS, hence the term CV is not recommended
concentration of X, count	concentration	CX = NX∙V­-1	[x∙L-1]	Tab. 4 (number concentration [[[Cohen 2008 IUPAC Green Book |24]]])
concentration of B, amount	concentration	cB = NB∙V­-1	[mol∙L­-1]	SI: amount of substance concentration [[[Cohen 2008 IUPAC Green Book |24]]]
concentration of O2, amount	concentration	cO2 = nO2∙V­-1	[mol∙L­-1]	Box 2; [O2]
count format	format	N	[x]	Tab. 4, 5; Fig. 5
count of X	count	NX	[x]	SI; see number of entities X
coupling control state	coupling control state	CCS	-	Section 2.4.1
dead cells	cell viability	dce	-	Tab. 5
electrical format	format	e	[C]	Tab. 6
electron transfer, state	electron transfer state	ET	-	Tab. 1; Fig. 2B, 4 (State 3u)
electron transfer system	electron transfer system	ETS	-	Fig. 2B, 4 (electron transport chain)
entity	entity	X	[x]	single countable object; Tab. 4
ET-capacity	ET-capacity	E	varies	rate; Tab. 1; Fig. 2
ET-excess capacity	ET-excess capacity	E-P	varies	Fig. 2
flow, for O2	flow	IO2	[mol∙s-­1]	system-related extensive quantity; Fig. 5
flux, for O2	flux	JO2	varies	size-specific quantity; Fig. 5
inorganic phosphate	inorganic phosphate	Pi	-	Fig. 1C
inorganic phosphate carrier	inorganic phosphate carrier	PiC	-	Fig. 1C
isolated mitochondria	isolated mitochondria	imt	-	Tab. 5
living cells	living cells	ce	-	Tab. 5 (intact cells)
LEAK-state	LEAK-state	LEAK	-	Tab. 1; Fig. 2 (compare State 4)
LEAK-respiration	LEAK-respiration	L	varies	rate; Tab. 1; Fig. 2
mass concentration of sample s	concentration	Cms	[kg∙L-1]	Tab. 4
mass format	format	m	[kg]	Tab. 4
mass of diluted sample	mass	ms	[kg]	SI: mass of pure sample mS
mass per single object	mass	MNX	[kg∙x­1]	Fig. 5; Tab. 4; SI: m(X); compare molar mass M(X)
mass, dry mass	mass	md	[kg]	Fig. 5 (dry weight)
mass, wet mass	mass	mw	[kg]	Fig. 5 (wet weight)
MITOCARTA	MITOCARTA
MitoPedia	MitoPedia
mitochondria or mitochondrial	mitochondria	mt	-	Box 1
mitochondrial DNA	mitochondrial DNA	mtDNA	-	Box 1
mitochondrial concentration	concentration	CmtE = mtE∙V-1	[mtEU∙L-1]	Tab. 4
mitochondrial content	mitochondrial content	mtENX	[mtEU∙x­-1]	mtENX = mtE∙NX-1; Tab. 4
mitochondrial density	density	DmtE=mtE∙ms-1	Example	Example
mitochondrial elementary marker	mitochondrial elementary marker	Example	Example	Example
mitochondrial elementary unit	mitochondrial elementary unit	Example	Example	Example
mitochondrial inner membrane	mitochondrial inner membrane	Example	Example	Example
mitochondrial outer membrane	mitochondrial outer membrane	Example	Example	Example
mitochondrial recovery	mitochondrial recovery	Example	Example	Example
mitochondrial yield	mitochondrial yield	Example	Example	Example
molar format	format	n	Example	Example
molar mass	molar mass	Example	Example	Example
negative	negative	Example	Example	Example
number of cells	number	Example	Example	Example
number of dead cells	cell viability	Example	Example	Example
number of entities B	number	Example	Example	Example
number of entities X; count	number	Example	Example	Example
number of viable cells	viability	Example	Example	Example
organisms	organism	Example	Example	Example
oxidative phosphorylation	oxidative phosphorylation	Example	Example	Example
OXPHOS-state	OXPHOS-state	Example	Example	Example
OXPHOS-capacity	OXPHOS-capacity	Example	Example	Example
oxygen concentration	concentration	Example	Example	Example
oxygen flux, in reaction r	oxygen flux	Example	Example	Example
pathway control state	pathway control state	Example	Example	Example
permeability transition	permeability transition	Example	Example	Example
permeabilized cells	permeabilized cells	Example	Example	Example
permeabilized muscle fibers	permeabilized muscle fibers	Example	Example	Example
permeabilized tissue	permeabilized tissue	Example	Example	Example
phosphorylation of ADP to ATP	phosphorylation	Example	Example	Example
P»/O2 ratio	phosphorylation	Example	Example	Example
positive	positive	Example	Example	Example
proton in the negative compartment	proton in the negative compartment	Example	Example	Example
proton in the positive compartment	proton in the positive compartment	Example	Example	Example
protonmotive force	protonmotive force	Example	Example	Example
rate in ET-state	ET	Example	Example	Example
rate in LEAK-state	LEAK	Example	Example	Example
rate in OXPHOS-state	OXPHOS	Example	Example	Example
rate in ROX state	residual oxygen consumption	Example	Example	Example
residual oxygen consumption	residual oxygen consumption	Example	Example	Example
respiration	respiration	Example	Example	Example
respiratory supercomplex	supercomplex	Example	Example	Example
sample	sample	Example	Example	Example
substrate concentration at half-maximal rate	substrate concentration at half-maximal rate	Example	Example	Example
substrate-uncoupler-inhibitor-titration	substrate-uncoupler-inhibitor-titration	Example	Example	Example
tissue homogenate	tissue homogenate	Example	Example	Example
viable cells	viable cells	Example	Example	Example
volume of chamber	volume	Example	Example	Example
volume format	format	Example	Example	Example
volume of sample s	volume	Vs	[L]	Fig. 5; Tab. 5

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