O2k-Publications: Topics
- Mitochondria and cell research
Mitochondrial physiology: MiP areas
- mt-Medicine (363 entries)
- Exercise physiology;nutrition;life style
- Comparative MiP;environmental MiP
- Pharmacology;toxicology
- mt-Biogenesis;mt-density
- Genetic knockout;overexpression
- Instruments;methods
Pathological states
- Alphabetical order
- Aging;senescence
- Alzheimer's
- Autism
- Cancer
- Cardiovascular
- COPD
- Diabetes
- Inherited
- Infectious
- Myopathy
- Neurodegenerative
- Obesity
- Parkinson's
- Sepsis
- Other
Stress conditions
- Alphabetical order
- Cell death
- Cryopreservation
- Hypoxia
- Ischemia-reperfusion injury and preservation
- Mitochondrial disease;degenerative disease and defect
- Oxidative stress;RONS
- Permeability transition
- Temperature: hypothermia; hyperthermia
Organisms
- Mammals
- Human
- Pig
- Horse
- Bovines
- Cat
- Dog
- Rabbit
- Mouse
- Rat
- Guinea pig
- Other mammals: including only mammals that are not listed as mammalian species above'.
- Model organisms
- Chicken (Β» Birds)
- Zebrafish (Β» Fishes)
- Drosophila (Β» Hexapods)
- Caenorhabditis elegans (Β» Nematodes)
- Artemia (Β» Crustaceans)
- Saccharomyces cerevisiae (Β» Fungi)
- Comparative MiP
- Non-mammals
- Birds (Β» Chicken)
- Reptiles - turtles, lizards, snakes, crocodiles, alligators
- Amphibians - frogs, toads, salamanders
- Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); Β» Zebrafish
- Hexapods - insects, springtails; Β» Drosophila
- Crustaceans - crabs, shrimp, barnacles, etc.; Β» Artemia
- Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
- Molluscs - gastropods, cephalopods, bivalves
- Nematodes Β» Caenorhabditis elegans
- Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
- Fungi - yeast, molds, mushrooms, etc.; Β» Saccharomyces cerevisiae
- Plants
- Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
- Eubacteria - true bacteria, cyanobacteria, spirochetes
- Archaea - archaebacteria
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 188 263 2 Genital 92 123 3 Heart 725 937 4 Kidney 150 183 5 Liver 646 841 6 Lung;Gill 59 82 7 Nervous system 606 732 8 Skeletal muscle 1106 1370
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 254 320 2 Endothelial;epithelial;mesothelial cell 259 294 3 Fibroblast 207 271 4 Islet cell;pancreas;thymus 55 67 5 Lymphocyte 58 76 6 Platelet 121 151 7 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 14 16 2 HEK 95 116 3 HeLa 38 55 4 Neuroblastoma 43 50 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 37 7 Other cells and cell lines 292 338
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Intact organism 53 248 2 Intact organ 23 38 3 Intact cells 1165 1314 4 Permeabilized cells 716 754 5 Permeabilized tissue 1115 1209 6 Homogenate 377 421 7 Isolated mitochondria 1265 1572 8 SMP 10 28 9 Chloroplasts 2 10 10 Enzyme 39 102 11 Oxidase and biochemical oxidation 39 49
Enzymes
- Alphabetical order
β’β’ Adenine nucleotide translocase β’β’ Complex I β’β’ Complex II;succinate dehydrogenase β’β’ Complex III β’β’ Complex IV;cytochrome c oxidase β’β’ Complex V;ATP synthase β’β’ Inner mt-membrane transporter β’β’ Marker enzyme β’β’ Supercomplex β’β’ TCA cycle and matrix dehydrogenases β’β’ Uncoupling protein
Regulation
- Alphabetical order
β’β’ ADP β’β’ ATP production β’β’ Aerobic glycolysis β’β’ Amino acid β’β’ Calcium β’β’ Coupling efficiency;uncoupling β’β’ Cyt c β’β’ Fatty acid β’β’ Flux control β’β’ Inhibitor β’β’ Ion;substrate transport β’β’ mt-Membrane potential β’β’ Oxygen kinetics β’β’ Q-junction effect β’β’ Redox state β’β’ Substrate β’β’ Temperature β’β’ Threshold;excess capacity β’β’ Uncoupler
Coupling control states
# O2k-Publications MitoPedia: Coupling control states Comment O2k Total 1 P OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2870 3099 2 R ROUTINE respiration Physiological state, intact cells 894 981 3 E Electron transfer system capacity Maximal noncoupled respiration 0 0 4 L LEAK respiration Resting state, non-phosphorylating respiration 2614 2773
Pathway control states
# O2k-Publications MitoPedia: Pathway control states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 610 754 2 N N-pathway control state NADH-linked, level 4 2478 2626 3 S S-pathway control state Succinate-linked, level 3 1689 1797 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 157 183 5 DQ Duorquinol-linked, level 2 26 31 6 CIV Complex IV single step Ascorbate & TMPD, level 1 702 730 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1581 1638 8 Other 133 149 9 ROX Residual oxygen consumption includes non-mitochondrial respiration 1522 1574
MiPMap combinations - examples
- Examples for specific combinations
- O2k-Publications: Human skeletal muscle β’β’ O2k-Publications: Human heart β’β’ O2k-Publications: Skeletal muscle - human vs mouse
- Browse data
O2k-Manuals and protocols and specific instrumental applications
- O2k-Manual β’β’ Instruments;methods β’β’ TIP2k β’β’ O2k-Fluorometryβ’β’ O2k-Fluorometry - Fluorophoresβ’β’ TPP + ISE-Module β’β’ O2k-pH ISE-Module β’β’ Theoretical background β’β’ O2k-Protocols β’β’ PBI Shredder